DreINT0166575 @ danRer10
Intron Retention
Gene
ENSDARG00000079308 | tor3a
Description
torsin family 3, member A [Source:ZFIN;Acc:ZDB-GENE-081104-165]
Coordinates
chr8:16569825-16572681:-
Coord C1 exon
chr8:16572559-16572681
Coord A exon
chr8:16570091-16572558
Coord C2 exon
chr8:16569825-16570090
Length
2468 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTGCATTGTTTTATGTTCAGGTT
3' ss Score
7.29
Exon sequences
Seq C1 exon
TGCCTACTGGGGACATTTGGTCAGGGTTTCCCCAGTACTATACTGGCATACTGACAGCCTGGTACTGCAGCGTGGGTCAGTGCTGCGATTCAGGAGACTGCAGGATCACAAATAACATCACAG
Seq A exon
GTAAAGCCATCAACATTTATGCATGCTTGCTTTTAAATCAGTATAATCATTTTAGAGTTGTGGAAAGAGGAGATATTTAAAAAAATCTGAACATGTGCTGAAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCATATGAAAAACATTTGATCTCCATTTGGTGCCTGTCAAAATGAGTTTAATATAAAACATGCAAAATGCAATTAAAATATATATCGTTTTGAATAACTTTTGTAAAATATTGTTTTAAAATCACAGTGTAAAATATATATTTATGTAAAAAAGAAACCAAAAACTTATTCTAACATACTTAAAAAAAAAAAAATATATATATATATATATATATATATATCATAAAAGTGATCATTATTCTATTACTAAATCTATAGTAGGGTTGCACGATACTGTGGAAGTATCATGATACTATGGCTCCAAAATACTGGCAGGTGTCACTGTAGTTTGTAAACGATAGTATCGTCAATAATGTTCTGCCTACAATACATAATGTTTCATGTGGAAAAGTCACTAAATGCTCACACGTTTGTGCAACAATAGTCCATTTTATTTTAATAGTCTATGGTGCCTTCTAAGGTTGCAAAAGTAGTAGCCTGTTGCATATTTTCTGAAGCTTCAGTTCGAATCTGAATCCGTTCATTTCTGCTCCTGTCAATATGATTTATTTGCAACAACATGATAAGACTGAAAGAAAAAAAGACATTAGATGAAAAACCCAAAATAGCAACAGAAAACATTGAAATTTTTTTCACCACTTCATATAGCCTAAGTTTGTTAAAAATGCTCTTTTCGTAACAATTTTCATTTGAAGTAATTTGTATCTTTATTTTAATTTTATTTATTTTTTTTTTTTTGGTACAAATACATTTTATGTGAAGAGACGTGCAAATAATGTTTTCAAAAATAAGGGAATTATTAATTCAATTCAAGTAGGCCTGTTATAACAAATAAAATACAGTATTTCTGACATTTTTCTTTGAGTTATGTTATTTGAGTTATGAATTACAGTATTTCAATGCTACTTGGTGTCATGATACTTCAGCTGGTATAGTATCCTGACATGAATTAATTGTATAACAACAACCCTAATCCATAGAATGTTTTATATCTTTTAATATACAATGATTTTTATAAATAAATCTTTATTTAGATCCCTTAATGAAATACACTGAAATATATTCTATTTGTGATTAATTATTATAACCGTTTATGCACCAAGCACTCTCTGCATTATCTTGTTTACAGTGTCAGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATACATATATATTATACATACATCACAATTTCATATAATATTTATTAATTTCTCTATATATTCTTTAAATAAAAGTAAGTGTGTATATAGCAAAGTAATTTAGAATTACGTGTTAACTTTTGTGCACTGTTCAAATTTACTACCTATAAATGTTAATCAACATTTATAGGTAGTAGGTAGTTGATTAAATCTGTTAATCAACCTCAGTTCTGATCAAAACTACTTAATGTTTTTTAAAATTACAGGATTTTAACCATTTAATTGCTACGTTCACAAATGATGTCACTGATTTGGTGATAATAAACACACAAAACGACATATTTACAATATAAAAAGTAAATGTTGACTGGATTTTTTGTCTTTTTTTTTTCTTTTTTTTTTAAAGGGTCAATTGTGCCAACTGATGATCAACTGTACAAATGACAAATTTTACCTCTTCCCAATAGGGGAAAACCGCAAACAATCAAAAATGCATGATTGTATGGTGTCATGGTTTTGTAATCAAAACAAATGTGGGTATAATGGAAGTAAATGGGGCAAAAACAGCCACCAATAGAAAACTAGGGAGGAAAAAAAATTGAAATCAATCAAAAAAAGGCAACGTTGTTTCACATGTCCAAGACTGTGATGAAAGGTGAAAAAATAATCCAGTTCACAAATACTTTTCATATTGAAAATACATCATTTTGAGTTTGTGTTTCACCAAATCAGTAGCGTTATTTATAAATTTGGCAATTACGGAGTTAAAATCCAGTAATTTCCTAAGAAATTAGGTAGTTTTTATCAGGACTGAGGTTGATTAACAGATTTGTGCAAAATAACTAGAAGAAAAAAAAATTAGTGTATTGAGGTTTTTTTTTTTATTCTAAGCATTTCTCCAAATTATGTGTCAAAATTTAAGATTTTTCACCAAAACTCATTCTGCTAGCTGAAACAGAAAACATTATGACCATGTTAAGACGCAAAATCACCCCAGAGTGGATGAAAACATCCCCAACAGCACACAAGGGTTAAGTTTTTTTAATTGTGATATTTTACAATAGTGCATTGTTTTATGTTCAG
Seq C2 exon
GTTTGGAGCGAGATCTCCAGCTGAAGCTCCACGGGCAGCATCTGGCCCAGTCTGTGGTTCTGAAAGCGATTCAAGGCTTCATCAAAAACCCTGAGTCCAACAAACCTCTGACTCTGTCCTTTCACGGCTGGTCTGGGACAGGCAAGAACTTTGTGGCCCGGATAGTAGCGGACAACCTGTACCGGGACGGTATAAAGAGCGAATGTGTGCGTTTGTTCATTGCCCCATTCCACTTCCCTCACGCGAGGTTGGTGGACGTGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079308:ENSDART00000102556:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(14.7=45.2)
A:
NA
C2:
PF063096=Torsin=FE(68.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]