RnoINT0154649 @ rn6
Intron Retention
Gene
ENSRNOG00000004307 | Tor3a
Description
torsin family 3, member A [Source:RGD Symbol;Acc:1310101]
Coordinates
chr13:74270657-74276275:-
Coord C1 exon
chr13:74276162-74276275
Coord A exon
chr13:74270923-74276161
Coord C2 exon
chr13:74270657-74270922
Length
5239 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
3' ss Seq
TGGGACCTCTTTTCTCCTAGGCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GCTGGAGCCTTCCTCTGTGGGGCCGGCGGTCGCTGGATATGCTCACTTCATGGTTCTGCCGCTTTCAGGACTGCTGCAGCGCGGGAAACTGCAGGATCTCCAACAACTTCACAG
Seq A exon
GTTGGAGCTGACATGATTTCAGGGTTCAGGTATCTGGGGGAAGGGGTTAGTGACTATGGAGAAGTGACTGCTGAGAAACCTCCCCCTCCTCCAATAAAAGGAAAGTCGGGTTTGCAATTATTTGAGGATCTCTCTGACAAGACTGTGAACTCCATGATTTCCAGAAAGGACACCCTTCAACAATAGGAACGACAGAACACCAGCACTGATAGTGTCCTTAACGGACGTTACATTACACTTGCTATGTGGCCGTTTTTATAACACCAGTCCTCAGGAGAGCTGGGAAGTACTCGATCCCCAGCCCTCCTAGGTTTTGTTGTTGTTTGGTTCATTGGTTGTTTTTGTAGTTTTTTCTTAGAGTATGGGGACACTTAGCTCAAGCACAAGAGGCTTTACTTTACCCCCAACACCAATCGTGGTGCTCCAGTGCTGGGGACATTTTTATCTTTAGTTTAAAGGTGCAGACCTTATTGGGATCTATGGGAACCATGAACATGTCACACCAAGCTAAGACAGCTGACAGGGGACATTGTAACACGCAGGCTATGCGTCACCATCCGTTCTCAGTCTAGACTGAAGATGTCCCTACACTCATGCCTACAGGACATCTTCTGAGGAGGAAGAATTGATCATCTCTGTTGGCTCCACTATGTATCAGGCCCGATGCTAAGAGTTCTGCAGCGACTGAGTCAGAATCTGCCACAGCCTGTCTCCTCTCGGGACTGTTAGAATCAGAACAGGAATAGTAAGCAGCCTCTCTGAGGGTAGGCGAGATTATAAAGCCAGAAAGCTGATCAATAACTGTGGTTAAAATGTCCCTTCGGGCTGGAGAGATGGCTCAGCAGTTAGGAGCCAGTTCAGAGGGCCTAAGTTCAATTCCCACAGTGTACATTAGGCCCCTCACCGCTTGCTACAACACTTCCAGGGGATCTGACACCTTCAGACTTCCGTGGGCAGCTGCACTCAGCTACAGAAACCCATGACTACATACATATATTTCTATACATAATTAAAAAGAATTTTAGAATGGTATGTTCTAGGGGTTGGGTGATAGATCACTTGGCAAAGTCCCTGCAGGGCAAACATGAGAGTCTGAGTTCCGATCCTCAGACCCACATAGAAGTTGGGCACAGCCCTGCACACCTGTCATCCACTGTCATGTTGGCAGAAACCGGTGGCTCCCTCAAGCCTGTTAGTCACAGCCAAATTGATTAGCAACAGGTCCAGGGGCAGACTATATGTCAAAAAACCAAAATGCACGATTAAGGAAGACACTTAATGTTGACCCCATGTGCATGCACACATGTACACACACATTAACGCACACATACAACACAGTGTTCCTTTCTAGTTGGGTTTGGTGTCCTGAAGTGTAGCACTTGGGAAATTGAGGTGGGAAGACAGTGCATTCGAGTTCAGCCTAGGCTACACAGAAAGACCCAGTCTCAATAAAGAAGCATCGGTCTCGAGGTTTAACCAGCAAAGGTCTGTGGGGTATAACCTGGGCTTCTTGGCTTTTATATCTTAAGAGACTAAGGCTATGGGGGGGGGGGGAGCTCTGCATTCTGAGAGAAACAGGAAGTTGTTTTCCATTGTAAATCAATTCATACCATTCCATGCATAAAAATCGCCCTGGGGGACAGCCTGCTCTCCTCCTGGAAGGCATAGCTGAATCACTGCTCCCTTCCCCCTCTGTGTTTTTATTCTGTCAGGTAGCCTAGTGCATGTTGCAGGTGGTTTGTGTTTTAACTCCCACTGTGGTATTTAGTGTGAGTCAGAAAACCTGTTCTGACAAAGGCCTGGTGGTTTAGTCCTGGGTGAAGTTTACCAATTTCCCCAGAAGTGATTTCTCGCCTGGAGTTTGTTGGCGTTCTCCCGATGACAGAAAGCCCAGTGAGGGAGGAGGCGGCCCAGTCAGTATACTGCTTGCCACTCAAGCATAGGGATCTGAATTCAATCCCCAGTACCCATGCCAAAGCCAGGTGCAGTGGCACACTCATGCACACCCATGCACACCCATGGGACACAGAGCTGTGATAGCAGGGTCCCTCGGCCTTGAAAGTCAGTCCAGCTAAACCGGAGCTCTGGTTTCGATAAGAGACCTCGGCTTAAAAAAAACAAGGTAGTGATTACCTGATGTGAACCTGTGGCCTCCTCATTAGTGTGCACAATGCATGTGCGATCCCCCTATACACATACAGGAACACGTACACACCCACAAAGAGAAAGAGAAGGAGGGGGAGGAAGGAAGGAAAGATGGTCAGAGCATCAGGGAGGGTCTAGCAGAGTGGAATCTCAGGCCACATACAGGTCAGGAAGTCTGAAGGAAGATTTACAGCAAGTCCCCTCTCTCCCTCTCTCCTTTTCCTTTCTTTTTTTTTTTTTTTGTTTGTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCTCTACTGGAACTCACTCTGGTAAACCAGGCTGGACTCGAACCTGCCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTGCACCACGAGCACCGGGTTAGCACTGCTCTCTCCTTAGACTACCCACTGTTCTTCAGACCTGGATATCCAAATCTGAAGCAGTCTGGTTCTGACAACAGGGGGACAGCTGCAAGTGTCAGTTTTGTAGCACCATTGGTTTTGACAGGAAGCAAAGTGATGGCAGTGTTTCAAAGTAGTCTGTTGTCTGCCACTATTCCAGAACTCCCTCTGGCTTGGCCCAAGGGACCTAGCCAGTTGTGTTGATAACAGGGTAATGGCCAGTGCCTTACCTGAACTGGCGGCAGCACAGCCTCCCTGCTTCCAAACTGCTTCTTCAGTGGGGACAGGAAAGCAGGCCGGGCTTTGGGAAGCTGCTCTCAAGTATGTGTCAGGCTGGGATGGGATGACAGGCAGAGAACATAGACTCCTGTAGCAGAGGTGGGAGCACCTTGAAGCCTGTCAGCGTCCTTCCACACCGTTCTGTCCATCCATTGCAGGGGATTCAGAAGGGGTAATCCTGTTCTCCCAGAATTCAATCTTGATTTCCCAAAGTCTCCCAAAACGCTCATTTAATATCACCGCCGGGAGTATATTACTTGCTGTTTAATAGTAAAGTTGCATTGCCGTCTATGTAGTTTTAAGGATGTTAGCGCTTTTGCTGGGGGAGTCCTCAGCTACCTTCTAACTAAACCCATCTTCTCTGTCATTTCATTCCTCCACGTGGCTTTCACTGCTTCACCTCCCTGCTCTATTCTTGCCCATCTGTCTCTGCCCAGTTGTTCTGCCAGTTCTTTATTTAACGAAACCCACATTCCCTTCTCATACAAAAAAAGCTACTGGCATAGTGGAAAGATTCCACAGCTTCCTCATTCCTCATCAGCAGCAGTGTCAGAAGCCATCCAGGAGAGGCTAAGGCTAGTGCACCACCTTCCTGAGATGGCCCACTGATTTTTGCATGGTCTTCGATGGATGAGCTCTTGAAGACAAGACCTTGAGAGACTTCATTCCAGGACTGCTTCTTGCTATTGATATGCCTCTCCTGTCATTTTTAAATCAATATAATAATCCCTGGGCATTATATTAAATCTTCCCACTCTATTGGTTAGATTTCCTGCAGATCCATATAAAGATGAACTTTCATGAATTAATGCTATTTAGATGAATTAATGATTTTATAGAATCCCTGATTTGATCTTAGGGAAAAGTTTTAAGAGATGGTTTTAGTTGTTGTGCAATGAAAATGTAATAAAGTTAGAATCAAGAATAGAATGTGCCCACTCCTCATAATAGTAAGTAAAGGCTGCATAGTAAGAAATACAATGAGCTTTCATAATTGCACTAAAAAAGAAATAGGCTTGGGACAAATTTGTGCTCAACGAAAAACATTCATTCTAGGTCAGATCCCAGGGTGAAGTGACAGGTGTGCACTACTATAAGACAAGGCCATGTGAAACTGTTGCTTTGACCTTATAATGAGCTTACAGAATGAAACACTGCTTTGAACTTAATATCAGTATCCTTTTGTAACTTCCATTTTGTGTAACATTTTATCTATAAGGTAATTCTTAAGAACTTTGGTCTATAAAAAGGCCAGAGAAAAGAAATAAAGAGGATGGGGTAGCTTGGGGGCCTCTGCCCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAAAAATCTATGTCTGTTTATATGTGACACTGTCTGCGCTGCCACGGTACCGAGAACTGGACGTAGACCTGAGAGGTTTAAAAAAACCATACACCTGGGTCATTTGTGTGTGGTATGAGAATGCTAAAGCTTTTACTGAGGTTCACAAAATATATACCCCAAGTTCACCAGGTGGAGAATTCCAGGAAGCACAGTGGGAAAACAGGCTTATGCCCTCAGGAACAACAAAACAGGAACAAAAAACAGGAACTGACTTAACAGTGTTACCACCCAGGTGTCCACCCAGGCCAAACAGAAAGGTCTGGATGTTCCTTTGTTAGGAACAGAAGACTTCCACATGCACCACCCAAGGCTCAGCAGGAGGCAAACACGGACAGGGCCCAAGAGGGTCCGACATATATGTACATGTGTAGGTATGTGTGTATGTATGTAAGCGTGCATGAACACTTATGGAGTTGATTGAGACAGGTGGCTGGGTCTGACCTCTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTTTCTACAAGTATGTACACTTAAGAATTAAAAGTCTAGAGTTTCTCACTGAGCATTCTTACCAGCCCCAGATAATTAAGGATTGTTCTGTCAGTATCAGTCCCCATCTGCTCCCCCTTTCGCTGCCTTCCAGATCTGGAAACCCTACAGATGCCAGGAAGGTCACGGCATAGCAGGACTATGCTCAGTCTAGAAGGCAGCATGACCTTCCGTAACCTCTCCCATAACAGCTTGCTTTTTCCCCTGTTTGGCCAAGTGAGGGTGTGACAAATGCATATAGAAAGCAGATAATGGGCCATAGAAATGACATCACCAAATATCCTGCCAGCACTTGGCAGTGAATTAACAGTTGAAGATACTGGGGCACACCTACCTAGCCATTTGATACAGTGAGTGAGTGAGTGTAGGTCATCCCAACAGAATATCATCTACTGTGAGGTTTGCCTTCTTGCTTCTTGCTCTGAGGTCACAGAAATCTTAATCGTGGGGTGTGGAGGGGAGGTGGTGCACACATGCCCCTGTGCTCTCACTGGGACCTCTTTTCTCCTAG
Seq C2 exon
GCTTAGAATCAGACCTTCGTGTGCGACTGCATGGCCAGCATCTCGCTAGCAAGCTGGTCCTAGAAGCAGTGAAGGGTTACTTAGAGATGCCCCAAGTTGGCAAGGCTCTGGCTCTGTCATTCCACGGCTGGTCTGGCACAGGCAAGAACTTCGTGGCACGGATGCTGGTGGACAACCTGTATCGGGACGGAATGAGGAGTGACTGTGTCAAGATGTTTATCTCTACCTTCCATTTCCCACACCCCAAGTATGTGGACTTATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004307:ENSRNOT00000005726:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(14.7=48.7)
A:
NA
C2:
PF063096=Torsin=FE(68.2=100),PF085656=CDC37_M=PU(58.2=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]