MmuINT0164021 @ mm9
Intron Retention
Gene
ENSMUSG00000060519 | Tor3a
Description
torsin family 3, member A [Source:MGI Symbol;Acc:MGI:1353652]
Coordinates
chr1:158599502-158603777:-
Coord C1 exon
chr1:158603661-158603777
Coord A exon
chr1:158599768-158603660
Coord C2 exon
chr1:158599502-158599767
Length
3893 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
3' ss Seq
TGGCACCTCTTTTCTCCTAGGCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCTGGAGCCTTCCTCTGTGGGGCCGGCGGTCGCTGGATGTGCTCACTGCATGGCTCTGTCGCTTTCAGGACTGCTGCAGCGGCGGCGGCGATTGCAGGATCTCCAACAACTTGACAG
Seq A exon
GTTGGAGCTGACGTGATTTTCAGGGTTCAGGTATCTGGGGGAGGGGGTTGGTGAGTATGGAGAAGCGACTGGTGAGAAACCTACCCCTCACGGGTCTGCAATTATTTGAGGACCTCTCTGACAAGACTTTGAACTCCACGATTTCCAGAAAGGACACTCTCCAACAATAGGGACGACAAAACAGCAGCACTGATAGTGCCCTTAGCGGATGTTACATTATACCAACTAGGAAAAGTGCCCAAATACTTGCTATGTGGCTGTTTTCAAAATACTAGTCCTCAGGAGAGCCAGGCAAGTACTTCATCCCTCAGCCCTCCTGGGTTTTTGTTGTTTGTTTTGTTTGTTTGTTTTTTAGAGTATGGAGATACTTAGTGATTTGTTTATAAAAAGATTAAGAAGTTTAAGATATGTTCTATGGGGTTGTGGGGAGGTATGGAAAGGGGGTGCCTCAGTGGGCCCATGCCAAGGCATCCCTTCCCGCTGAAGGGCCAGCAGGGGAAGAAAGGGGAGTTAAGAGGGTAGTAGAGGCAGAGGAAGGAGAGAGAGACAGAGACGGAGAGGCCGGCCTTGAGCACGTGGAGAGAGGGGGAAGGGAAGGGGGAAGCGAAGAGCCCAAGAGAGAAGCAAGCGGGAAGCAAGAGTAAGTAAGGGAGGAGGGGTAAGCAGCCCCTTTTACAAAGGGTCAGGCCTTTGTGGGGAGGAGCATACGAGGCTGTTGCCAGGCAAGTGTAGGTTGGCGTTTAGACAGAATGCTAACACTTAATCAAGAGCAAGAGGCCCTTACCTTACTCCCAACCCCAGTCGTGGTGCTCCCAATTTTTTTTTATCTTTAGTTTATTTATTTATTTATTTATTTATTTATTTATTTAAAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTCAACTCTGAAATCCCCCTGCTTCTGCCTCCCAATTGCTGGGATCAAAGGTGTGTGCCACCACTGCCTGGCTAGCTTTAGTTTAAAGGTACAGAGTTTATTGGTATCTATGGGAACCATGAACATCTCATACCCAACTAAGACAGCTGGCAGGAGACACTGTAAGGTGCAGGTTATGCCCTGGTCATCCTCTGTTCTGAAGATGTCCCTATACTCATACCTGAAGGACATCTTTTTTCCTTTTTAAATATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAAATACACCAGAAAAGGGTGTCAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGATCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCAGGAAGGGCATCTTCTGAGGAAGAACTGTTCATCTCTGTTGGCTCCACTATGTACCAGGCCCTGTGCTAAAAATTCTGCAGCGACTGAGTCAGAATCTCACACAGCCTGCCTCTTTTCAAGAGTGTTAGAATCGGAATAGGAATGGTAAGCAACCTCTCTGAGGGGAGGTGAGATTATGAAGCCAGAAAGCTCATCAATAATTGTGGTTAAAATGTCCCTTAGGGCTGGAGAGATGGCTCAGTAGTTAGGAGCCAGCATTACCCTTACAGAGGGCTTAAGTTCAATTCCCACAATCCCCATTAGCCACCTCACCGCTGGCTACAACTCCACTTCCAGGGGATCGGACTCCCTTTTCTGGCTTCTGCAGGCAGCAGCCCTCAGCTACAGACACCCAGAACTACATACATATATCTATATACATAATTATATAAAAAGAATTTTTAAAATGGTATGTTCTAGGGTTTGGGAGTTAGATCACTTGGCAGGGTGCCTAAGTGATCTAGGGGAAGCAAGAGTCTGAGTTCCAATCCCAGTACCCACATAAAAGTTGGGCATAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAACACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGACTACAAAGTGAGTTCCAGGACAGCCAAGACTATACAGAGAAACCCTGTCTCGAAAAAACCAAAAAAAAAAGTTGGGCATAGCTCTGCACACCTGTCACTCACTGCACTGTTGGCAGAGACTGGTGGCTCCCTGAAGCCTGTTAGCCACAGCCAAACTGATGAACAACAGGTCCAGGGACACACCATATCACACACACACACACACACAAAAAAGGCATGATTAAGGAAGACACTTAATGTTGACCCCTTTTGCATGTACACATGAACACCCACATGAACACACACACAACACACACAGTGTTCCTTTCTAGTCAAGTATGGTGTTCTGTAGTCTAGCACTTGGGAAACTTAAAAGATATTGTCTAGGAGCTCAGCCTAGGCTACATAGAAAGACCCAGTCTCAATAAAGAATCGTCCGTCTGTCTCCAGGTTTAACCAGAAAAGGTCTGTGGCATATAACCTGGACCCAGCAGCAGCAGTGAGCGGTTAAGGCTGGTGGATGGTTTTCCTGAGATGCTCCACTGTCTTTTGCATGGTCTTTGATGGATGAGCTCTTAGAAACAAGAGACTTCATTCCAAGATTGCTTCTTGCTATTCATATGCCTTTCCTGTCATTATTAAATTAATATAACAATCCCTGGGCATTAGCCCACCCTATTAAGCAGATTTCCTGCAGATCAACATAAAGATGCACTTTCATGAATTAATGCTACTTAGATGAATTAGTGATTTTATGGAATTCCTGATTTAATCCTAGGGGAAAAGTTTTAAGAAATGGTTTTAGTTGTTTTGCGAGGAAGATGTAATAAAGTTAAAATCAAAAATAGAACATGCCTACTCCTCATAAAGGCTGCATAATAAGAAATGCAACGAGCTTTCATAATTACACTAAAAAGAGAAATAGGCTTGAGACAAATTTGTGTTCACAGAAAACCATTCATTCTAGGTCAGATCCAAGGATGAAGTCACAGGTGTGCACTATAAGACAAGGCCACAGGAAACTGTTGCTTTGAACTTATAATGAGTATACAGAATGAAATACTACTTTGAACTTAATATCAACATCCTTTTGTAACTTCCATTTTGGGTAGCATTTTATCAATGAGGTAATTTTCTAAGAGTTTTTGTCTATAAAAAAGCCAAAGAAAAGAAATAAAGAGGATGGGGTTGGTTTGGGGGGCTCTGCCCTATCCATCCATCCATCCATCCATCCAAATGTCTATGTATGTGTGTAGGTATATGTGTATGTATATAAGCATCCATGAACACTTGTGGAGTTGATTGAGACAGGTGGCTGGATCCGGTCAGAACTTAAGAGTTAAAAAAGCCCAGAGTTTCTCACTGGGCATTCTTGCTAGTCCCGGATAATTAAGGATTGTTCTGTCAGTAGTACTGACCCCATAAATCGCTCACCTGGCCCCGTCTGCTCCCCCAATTCACTTCCTTCTAGATCTGGAAATCCTATAGATGCCAGGAAGGTCATGGCGAGGCAGGACTAGTACTCAGTCCATCTCTTAAGTGTTGCTTTTTGGCCAGATTGAGGGCCAGGTGCCCTTCCATGACCTCCCATGGCAGCTTGCTTTTTCCTCTTTTTTTCCCTTTGGAGGAACATACAAACAAAGAAAGCAGATAATGGACCTTAGAAATGACAATACCAAACTTTCCACCAGCACCCAGCACTGTGTGCACAGCAATTAACAGTTGTATACACAGGGGCACACCCACCTAGCTATTTGATAACAATGAGTGTGAGTGTAGGTCATCCCAACCGAACATCCTCTGCTCTGGGGTTTGCCTTCTTGCTCTGAGGCCACAAGGATCAGACAATAGAAATCCCAGGGTGGGGAGGGGAGGTGGTGCACACAGGCCTCTGTGCCTCTCACTGGCACCTCTTTTCTCCTAG
Seq C2 exon
GCTTAGAATCAGACTTGCGTGTACGACTGCACGGCCAGCATCTCGCTAGCAAGCTGGTCCTAAGAGCAGTGAAGGGCTACTTAGAGATGCCCCAAGTAGGCAAGGCCCTGGCTCTGTCATTCCACGGCTGGTCTGGCACAGGCAAGAACTTCTTGGCACGGATACTGATGGACAACCTGTATCGGGACGGCATGAGGAGTGACTGTGTCAAGATGTTTATTTCTACCTTCCACTTTCCACACCCCAAGTATGTGGACACGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060519-Tor3a:NM_023141:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(15.4=50.0)
A:
NA
C2:
PF063096=Torsin=FE(67.7=100),PF085656=CDC37_M=PU(58.2=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: