MmuINT0164021 @ mm10
Intron Retention
Gene
ENSMUSG00000060519 | Tor3a
Description
torsin family 3, member A [Source:MGI Symbol;Acc:MGI:1353652]
Coordinates
chr1:156669371-156673646:-
Coord C1 exon
chr1:156673530-156673646
Coord A exon
chr1:156669637-156673529
Coord C2 exon
chr1:156669371-156669636
Length
3893 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
3' ss Seq
TGGCACCTCTTTTCTCCTAGGCT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCTGGAGCCTTCCTCTGTGGGGCCGGCGGTCGCTGGATGTGCTCACTGCATGGCTCTGTCGCTTTCAGGACTGCTGCAGCGGCGGCGGCGATTGCAGGATCTCCAACAACTTGACAG
Seq A exon
GTTGGAGCTGACGTGATTTTCAGGGTTCAGGTATCTGGGGGAGGGGGTTGGTGAGTATGGAGAAGCGACTGGTGAGAAACCTACCCCTCACGGGTCTGCAATTATTTGAGGACCTCTCTGACAAGACTTTGAACTCCACGATTTCCAGAAAGGACACTCTCCAACAATAGGGACGACAAAACAGCAGCACTGATAGTGCCCTTAGCGGATGTTACATTATACCAACTAGGAAAAGTGCCCAAATACTTGCTATGTGGCTGTTTTCAAAATACTAGTCCTCAGGAGAGCCAGGCAAGTACTTCATCCCTCAGCCCTCCTGGGTTTTTGTTGTTTGTTTTGTTTGTTTGTTTTTTAGAGTATGGAGATACTTAGTGATTTGTTTATAAAAAGATTAAGAAGTTTAAGATATGTTCTATGGGGTTGTGGGGAGGTATGGAAAGGGGGTGCCTCAGTGGGCCCATGCCAAGGCATCCCTTCCCGCTGAAGGGCCAGCAGGGGAAGAAAGGGGAGTTAAGAGGGTAGTAGAGGCAGAGGAAGGAGAGAGAGACAGAGACGGAGAGGCCGGCCTTGAGCACGTGGAGAGAGGGGGAAGGGAAGGGGGAAGCGAAGAGCCCAAGAGAGAAGCAAGCGGGAAGCAAGAGTAAGTAAGGGAGGAGGGGTAAGCAGCCCCTTTTACAAAGGGTCAGGCCTTTGTGGGGAGGAGCATACGAGGCTGTTGCCAGGCAAGTGTAGGTTGGCGTTTAGACAGAATGCTAACACTTAATCAAGAGCAAGAGGCCCTTACCTTACTCCCAACCCCAGTCGTGGTGCTCCCAATTTTTTTTTATCTTTAGTTTATTTATTTATTTATTTATTTATTTATTTATTTAAAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTCAACTCTGAAATCCCCCTGCTTCTGCCTCCCAATTGCTGGGATCAAAGGTGTGTGCCACCACTGCCTGGCTAGCTTTAGTTTAAAGGTACAGAGTTTATTGGTATCTATGGGAACCATGAACATCTCATACCCAACTAAGACAGCTGGCAGGAGACACTGTAAGGTGCAGGTTATGCCCTGGTCATCCTCTGTTCTGAAGATGTCCCTATACTCATACCTGAAGGACATCTTTTTTCCTTTTTAAATATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAAATACACCAGAAAAGGGTGTCAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGATCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCAGGAAGGGCATCTTCTGAGGAAGAACTGTTCATCTCTGTTGGCTCCACTATGTACCAGGCCCTGTGCTAAAAATTCTGCAGCGACTGAGTCAGAATCTCACACAGCCTGCCTCTTTTCAAGAGTGTTAGAATCGGAATAGGAATGGTAAGCAACCTCTCTGAGGGGAGGTGAGATTATGAAGCCAGAAAGCTCATCAATAATTGTGGTTAAAATGTCCCTTAGGGCTGGAGAGATGGCTCAGTAGTTAGGAGCCAGCATTACCCTTACAGAGGGCTTAAGTTCAATTCCCACAATCCCCATTAGCCACCTCACCGCTGGCTACAACTCCACTTCCAGGGGATCGGACTCCCTTTTCTGGCTTCTGCAGGCAGCAGCCCTCAGCTACAGACACCCAGAACTACATACATATATCTATATACATAATTATATAAAAAGAATTTTTAAAATGGTATGTTCTAGGGTTTGGGAGTTAGATCACTTGGCAGGGTGCCTAAGTGATCTAGGGGAAGCAAGAGTCTGAGTTCCAATCCCAGTACCCACATAAAAGTTGGGCATAGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAACACTTGGGAGGCAGAGACAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGACTACAAAGTGAGTTCCAGGACAGCCAAGACTATACAGAGAAACCCTGTCTCGAAAAAACCAAAAAAAAAAGTTGGGCATAGCTCTGCACACCTGTCACTCACTGCACTGTTGGCAGAGACTGGTGGCTCCCTGAAGCCTGTTAGCCACAGCCAAACTGATGAACAACAGGTCCAGGGACACACCATATCACACACACACACACACACAAAAAAGGCATGATTAAGGAAGACACTTAATGTTGACCCCTTTTGCATGTACACATGAACACCCACATGAACACACACACAACACACACAGTGTTCCTTTCTAGTCAAGTATGGTGTTCTGTAGTCTAGCACTTGGGAAACTTAAAAGATATTGTCTAGGAGCTCAGCCTAGGCTACATAGAAAGACCCAGTCTCAATAAAGAATCGTCCGTCTGTCTCCAGGTTTAACCAGAAAAGGTCTGTGGCATATAACCTGGACCCAGCAGCAGCAGTGAGCGGTTAAGGCTGGTGGATGGTTTTCCTGAGATGCTCCACTGTCTTTTGCATGGTCTTTGATGGATGAGCTCTTAGAAACAAGAGACTTCATTCCAAGATTGCTTCTTGCTATTCATATGCCTTTCCTGTCATTATTAAATTAATATAACAATCCCTGGGCATTAGCCCACCCTATTAAGCAGATTTCCTGCAGATCAACATAAAGATGCACTTTCATGAATTAATGCTACTTAGATGAATTAGTGATTTTATGGAATTCCTGATTTAATCCTAGGGGAAAAGTTTTAAGAAATGGTTTTAGTTGTTTTGCGAGGAAGATGTAATAAAGTTAAAATCAAAAATAGAACATGCCTACTCCTCATAAAGGCTGCATAATAAGAAATGCAACGAGCTTTCATAATTACACTAAAAAGAGAAATAGGCTTGAGACAAATTTGTGTTCACAGAAAACCATTCATTCTAGGTCAGATCCAAGGATGAAGTCACAGGTGTGCACTATAAGACAAGGCCACAGGAAACTGTTGCTTTGAACTTATAATGAGTATACAGAATGAAATACTACTTTGAACTTAATATCAACATCCTTTTGTAACTTCCATTTTGGGTAGCATTTTATCAATGAGGTAATTTTCTAAGAGTTTTTGTCTATAAAAAAGCCAAAGAAAAGAAATAAAGAGGATGGGGTTGGTTTGGGGGGCTCTGCCCTATCCATCCATCCATCCATCCATCCAAATGTCTATGTATGTGTGTAGGTATATGTGTATGTATATAAGCATCCATGAACACTTGTGGAGTTGATTGAGACAGGTGGCTGGATCCGGTCAGAACTTAAGAGTTAAAAAAGCCCAGAGTTTCTCACTGGGCATTCTTGCTAGTCCCGGATAATTAAGGATTGTTCTGTCAGTAGTACTGACCCCATAAATCGCTCACCTGGCCCCGTCTGCTCCCCCAATTCACTTCCTTCTAGATCTGGAAATCCTATAGATGCCAGGAAGGTCATGGCGAGGCAGGACTAGTACTCAGTCCATCTCTTAAGTGTTGCTTTTTGGCCAGATTGAGGGCCAGGTGCCCTTCCATGACCTCCCATGGCAGCTTGCTTTTTCCTCTTTTTTTCCCTTTGGAGGAACATACAAACAAAGAAAGCAGATAATGGACCTTAGAAATGACAATACCAAACTTTCCACCAGCACCCAGCACTGTGTGCACAGCAATTAACAGTTGTATACACAGGGGCACACCCACCTAGCTATTTGATAACAATGAGTGTGAGTGTAGGTCATCCCAACCGAACATCCTCTGCTCTGGGGTTTGCCTTCTTGCTCTGAGGCCACAAGGATCAGACAATAGAAATCCCAGGGTGGGGAGGGGAGGTGGTGCACACAGGCCTCTGTGCCTCTCACTGGCACCTCTTTTCTCCTAG
Seq C2 exon
GCTTAGAATCAGACTTGCGTGTACGACTGCACGGCCAGCATCTCGCTAGCAAGCTGGTCCTAAGAGCAGTGAAGGGCTACTTAGAGATGCCCCAAGTAGGCAAGGCCCTGGCTCTGTCATTCCACGGCTGGTCTGGCACAGGCAAGAACTTCTTGGCACGGATACTGATGGACAACCTGTATCGGGACGGCATGAGGAGTGACTGTGTCAAGATGTTTATTTCTACCTTCCACTTTCCACACCCCAAGTATGTGGACACGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060519:ENSMUST00000079625:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(15.4=50.0)
A:
NA
C2:
PF063096=Torsin=FE(67.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types