BtaINT0152662 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009419 | TRIM29
Description
Bos taurus tripartite motif containing 29 (TRIM29), mRNA. [Source:RefSeq mRNA;Acc:NM_001099379]
Coordinates
chr15:31213143-31216890:-
Coord C1 exon
chr15:31216814-31216890
Coord A exon
chr15:31213975-31216813
Coord C2 exon
chr15:31213143-31213974
Length
2839 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACTCTCCTTTTCCCACACAGTCG
3' ss Score
8.97
Exon sequences
Seq C1 exon
GCTACCCTTCCCTCATCAGGAGCCAGAGCCCCAAGGCCCAGCCCCAGACCTGGAAATCTGGCAAGCAGACTTTACTG
Seq A exon
GTGAGTGAGGAGTCCCCCACCTGGGCACTAGCATGTCCAGAGTGGGCCCTGAATGGGGCTCCCAGAGGCATCTGGTCATCACTTGTCCAGGGCCTGTGGGAACATGGTGATATCTCCTGGCCACAGGATGGAGAGAGGAGGCAGTGGCCTGAACACCAGCTTCCAGCAAAGGGTAGTAAAGAAAGACAAGGCCTGATAGGCAGGGGGCCTGGGTAAGCACAGATTTTCTGGGCCTTGATTTTCTAGTCTGTAAAGTGGGCAGTTTTTAAAATTTGCAGATGATTGTTGGCTGCCTCTGCTTGTTGAATGGTGGACAAAATGCTGAATATGGGGGACTGGCATCCTGGACACGAGTCCCACTTCCCTGGGGGTGCATCTCTAGTTCTGACAGCATAGAGGCCATTGGGATGATAGTGTGGGTGAAACAGAGGCTGTGAAGTTGGGAATAGAGATATTTAAGATTCGATAGCTAATGTCGCTGAGTAGGGGCATCAAAGAGCAGGACAAGAAGGAGCATGGTCTTGGAGTCCAACCACCTGGTAGCTGTGGGACCCAGGATGAGTCAGAGCCCCTTTTGGGACTCCACAATGCAGTGCTGAGATGGGATTGATCTCTAATATCTGTAGATCTGACATACTGAGCCCCGCCCAAGACCTCAGTGATCAGGGGCTGTCCTTGATGGACAGCTGGAGGCTGGGCCTGTGGAGGCTGGGCCTCCTCTTGGGAATGCTCTCTCCCAAGGCCTTCGCCAGGCCCTGCTGAAGGGGTCAGTCAGCTGCCTTGGATGGAGGTGGCTTCTGTGTGCACAGGGCCTGGAGCCCCTGGCTCCCTACTGTCTTTGTATTTGGAGGTCAGAACATAGAGATGATTTGCTCCTGGCTACAAAGAGTGACTGACGCTGGTTTAATTGGAAGAGAATCTTTAATTTGCTGGCGATGGAACTGAGTGATGATATGTGTAATTTGAACCAGGCCCAGGGCCACTGCAAGAGCAGGGCTGCAAAAAGCAGATACGGGAAGAAAAAGGAAGGCTTCTGTTCCTGGCTCAGTCCTTCCCCACCCGCCCCCTACTTTCCCACCATCCCAGAGCCCCAGTCCCAGCACAGAAGACTCATCACCACCTTGAGATGCCTGGCAGGGCAGGGTTCTGCGGTCCCCAGCTGGCACCAGCACAGTGGGGAGGATGCGGGCAGGTGCTAGTATGGGCAGAGGCTGGCCTGGGAGTCAGGATGCCTGGGCTCTTGCCCCAGTCCTCTCACCAACTTGAGTCATTCTTCCCTGTGGCTCAGTTTTCCCATCTGTAACATGGGCAGATGGCCTGGATGACTTCCTAAGTCTTCTGACTTTCATGTGCTGTGACCCTGAGCCTGGGAGGAAACAGGTAGGGGATCGGTGTGTATGTGCTGGGAGCATCCTGCCCAGATGCCGTGGGGCTCTGTGCCCACCCACCGCTCAGCTCTCAATAAGACAGCACTATTCACTGACCTGCCATCCATTTGCTTGACCCAACCTTCCTTTAAGAAAGGCTTTGGCCATTTCTGGGCCTACCCACTTCACCTTACTGACTCTTCAGGGGTCCAGGCTGGCACCTGGGGATCAGGAGACTGGATCCAAGCCCTGCTCTCCTGCTAAGCAGCTGAGGAACTTTGGCCATCTCTCCCTGCCCTGAATCTCTGTCTCTTCCATTGTTTAATGAGTGGTTTAACCAAGGCCAGAGCTAAGTTCTCTTAGCCCTCACGTTCCACAGGCCCCCAGTTCCACGGTGGACCAGATATAGGCAAGGAGCTACTGTAGACACAGGAGTCCAGGCAGGCAGGCCCAAGGCAGCAGCTGGGGTCGCCCTTGGGGTCTCCTGAGGTCAGTGTGGTGTGAGATGGGCCAAGGCTCTGACCCAGTTCAAGGGCAAAGCCACTTCCGGAGACCCTCTAGGGTCCAGGGCACTCTCAGGGGCAAGCTGCAGCTGAAATGTGCTCTTCTGTTGCAGCCTGGAGAGTGGTTGCTCAGGGCCCTGATGAAGTGATTGGGAGGAGAGGGGCGTGCTGATTTCATGAAATTGCTGCAGGATGTAATACACAGGGCTGGCAGGAAAGTTGTCACCCTCTCTGTCCTGAGAGATGCTTTCTGAATCCTGATGAGGGGACCAGGATGAGAGAGGTGGAGGGGCTTGCAAGGGGGGAGGCCCCCAGTCTGTGTTGGGCTGGGGGGTGGTTCACCCTCTCCACACCCCCTTCCGTCAGGGAGAATGATGCAGAGAGAGCAGAGGCCAACCCCTGAGACTCAGAAGTGCTATGTTGCCATGGGTGGAGGCGAGGGTTGAGTTCTGGAGCCAGGTTGCTGGGGTTCGAATCCCAGTGCCTCTGCTTACTAGCTAAGGGACCTTGGGCGAGTTGCTTAGCCTCTCTGTGCCTTGGTTTGTTCATGTATAAAATGGGTTTCCTAATAGTAACCCACTTAATTGGGTGGTTGTGGAAATTCAGTGAGTCCTTCTGTGGAAAGCCCCACACCAGGTCTGTAGAGTAGAGAACGATGGATGAATGGGAGCTACGATGGTGCTGGGAGGGGCTTCCTGGGCATGGAGAGAGCATTTGACCAGGCTGAGGTTCAGGCTCACCCGTCAACTGGTGGAAAGAATTCTAATCAGGATGTGAACCCGGAGACTGTGATACCACTGGCGCCCACCCCAGTCCCAGGGTAGATGGAGCTCACAGGTTAGGCCACAGGGCCCTAGGGTTATTGGGGTTCAGACCACTGCTGCTTCCTGGTGGAGGTGAGGGTGTGGGGTCTGGCTGGCGGGCACGCATGCCATCGGACTTCCTAACCACTCTCCTTTTCCCACACAG
Seq C2 exon
TCGCACTACCGGCCCTTCTACGTCAACAAAGGCAACGGGATCGGGTCCAACGAGGCCCCATGAGTTCCAGATGGGCTGGAGCGAGGCCCCGCCACCCCCGCCCTCCCCGCCGACTGCTCTCACTACCCTTCTCATCTGCCCTCAGCCCGCTAGCTCAGGGCCGCCTGGCCGCCCCCTTCCTCATCGTCAGCGTGCTCCATGCAGGCCTCTCCTGCTCTGTAACTAAGGGTCACCATCTTTCCTGTGCTCGGATGGAGGTGGGAGACAGCTGGGCTTTTCTCCCCTAACCCACCACTCTCCTGCTCTTGGGCAGGATTCTTGGGACCGGTGGTGGGTGCCCACGCAGTACTCGCCCACCTTCCCTGCCCAGCCCTGCTGTCTCCAGGCCTGTTGGCTACTTCTCTCCAAGGATCCCTATGCCACAATGCAGTAAGTAGGCACCTGGCCACAAGAGCTGCCTGCCTCCCATCCGTGTGAGCCACTTCTTCCTGGCAGCTTGCCCCCCGACCCAGGAGAAGACTGGCTCCATGTGCCCTGCTCGGGTCCTGCTGACCAGTGCCCAGCCTGGCAGGGCCGCAGCCCTTGGCCCCCACAGACGGAAAGCTCCCAGTGCCCTGGGGTCACCCTGCCCAGCCTTGGGTCTCCCCACATCCACCGTGAGTGTGTGGTCCCTGAGGACGGGCTCCCCTCGCCGCCAGGAGGGCCTTCGTCAGGATAGCCCTTTCTTCTGAGATAAGCCATTCCATTGGCCGTTGGCGTGACATACCCAACCCAGGAAGACAGCTGCTGGCCCAGCCGCTCTGAGGGAAATGTAGTTTACCTGCGGAATTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009419:ENSBTAT00000012396:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.425
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development