RnoINT0155800 @ rn6
Intron Retention
Gene
ENSRNOG00000021771 | Trim29
Description
tripartite motif-containing 29 [Source:RGD Symbol;Acc:1307858]
Coordinates
chr8:47695431-47699065:+
Coord C1 exon
chr8:47695431-47695507
Coord A exon
chr8:47695508-47698052
Coord C2 exon
chr8:47698053-47699065
Length
2545 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCATTCCTGTCTCCCCACAGTCT
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCTATCCCTCCCTCCTCCGGAGCCAGGTCCCCAAGGCCCAGCCTCAGACTTGGAAATCTGGCAAGCAGACTCTACTG
Seq A exon
GTGAGTAAAGAGTTCCAGGAGGGAGGCAATGCTCTAGGCATGCGCAGTGGTGAGTAAGGCGCTCCAGGAGAGAGAGGGGCACATGCTCCAGGCATGCGCAGTGGTGAGTAAGGTGGTCCAGGAGAGAGGTACATGCTCCAGGCATGCGCAGGGACCTGGCAACTGTGCAGCCTTACAGAGCCCGTGGGAAGAGAGTGACTTTTCTGTGCCATGCTGGGAACATGGGAGTCGGCAATGACCCATACACTCAGAGGTAGCAAAGACAGAGAAACGGACTTACAGGCAGGGGACCCGAGTAAACGCACACTGCCTTCGATCTCAGTTTTGAACGTGCAACATGGGCATCCCATGTTTGTACTAGCGAGTGGTCACTGGGTATCTATGGTGGCTTCGTCTCCAAGAGGTATGTGATTGTGAAATACTCAGTCCACTGGACCAACGTCCCAGAGATGGGTTTCACTCTCAGGGTTACTTTCTGTCTCTGACAGCATGTAGGCCATTAGGGGTGATAGCGTGGGTGGGGGGAGCTGGAAAACTAGATATTCAGGATTTATTCTTTAATAACCCAAAGCTGGGGTTATGAGAAAGCAGCTCTGGACGTGAGCGTGGCCAAGGCATCCAGGCCACCTGCTTGCACTTCAGAACCACATACCCTTCTTAAGACTCTATTCTTATAATGTGATTGTGAGATGAGGGGGCTCTCCAATTCCCCGCAGAGGGGATATGTCTTCTCCTTGCCTGGGAACAGCAGGGATCAGAGACTATGACCCTGGAGCCTTCCTCTTCCCTAATGTTTCCCTCCCAAGGCTTGCTAGGTCCTGAGAGGGCCATCCGGTGTCACCATGCAGGTAGTATCAGGGTTTTGTTGAGATGGGGGTCAGAGCCCTCACTTCCGTTGCTTTTGCATTTTGAGGTCAGAGCATGGGATTTGCTCTGTTCTACAAAGAGCAGCTGGGGCTGGTTTAATTGGAAAAAGTCTTTAATTTGCGGGTGAGAGGAGCCAAGTGATTGCGTATAATGCAGAGCTGGGCCCAAGGGCATTGGAGCAGTGGGATTGTGGGAAAATAATGGGAGAGAGTGATTCCTCTCTCTACTGTGCACTTCCCTACTGTCTACCTTCCTGTTTCCCAGAGTCCCCACAGGGAATGCTCTCCAGCCTCCAAGGCTCCAGCAGGACAGAGCTGTGCTGTCCTACTGTGGCACCTAGTGTTGGGAGGACAGAAGCCAGTGTAGTGTGAGGCATGGAAGTCAGGCGGGCTGCAGCCCCAGTCAACACCACACCAGCTTCCTGTGCGATTTTGTATGAGTTGATCTTCCATGCTTCCGTTTTCTTCATTTCTAACATGAATTCCTCAGCTTGGGTGATCTCATAGTCCTTCTCACTCTCACATGTAGTGACCCTAATTCGAGAGGGATGGAAATGAGCACCCCACTCACCCCCTGCCCTCGCCTCTCAGACAGCAACATTGTTCATTGGCCTGCAACCCATATGCTATTGACACAGCCTTTCAGAAAGAAAAGTTCTTGCTCTTTCCTCTTACCCTGCGGACTGCTTTGGGGCCCAGGAATGCATCTGAGGTCTAGAGAGACCTGCTAGAGCGGACCTGTGACTTTGTCCATGCCCTGCCTGATTCCTACTATGCCAGAGTGTCAGACCAGGGGCCTCTGGGAGGCCCAGAGCAGCTCTGTGCCTGACCCGCTTAGGGACAAGGCTGATTCCTGAGACCCTCCGGAGGCCAGCAGTGCTTGTAGTGGCCAAAGGCAGCTCCATTTTGTTCTTCTGTGCCGGCCTGGGGGACTGACTTCTCAGTGGGGGTTAGGAGGAAGGGGCTGAGTTCCTGAAATTGTCATATGACATGGTCTCCACAGAGAGGGTCAGAGAGGCTGGTGCTCCATAATTATGGATAGTGGGGAGGGAGCACAGTGGAGGGCGGGGCTGGCACAGTGGCACACTCATTTGCTCATTCGGTACCCTTCTGTCAGGGGGAATCAGCAGAGAGAGCCTGAGCTGTCATAGGACGTGCTTGAGACACAAGAATAATAGCAGGAAGTGGAGTGGAGCAGGGGGTGATGGGGTTTGGAGTCCAACCTCTGGGTCTCTCATCCCATTCCCCCTGTTCACTGGCTGGCGACTGGGACATGCTGCCCAGCCTCTCTGTGCCCCGGTTTGCTTACTTATAAAGTGGCTGTGATCATAGTCGCCTATTTAATTGGACGGTTGTAAAACCTAATTGAGTCTGTCCATGGCAAGCCCTTGGCACGGTGCTGTGTAGTTTTGTAGAATACAAAATGCTATAGCACACAGTGGCTGTGGTGACACTAGGAGGATCTTGGCGGTGGGGGCGGGGGTGAAGCCCAAGCTTCATAGACTAAGGTGCAGGAACAGACTCGAGTTAGAATTTGGACCTGGAAGTTATATCTCCAGTCGCCTCCTGGTAGCAAGATAGGTAGGTCTTGCAGGCTGCTTCAGAGTCTAGGCTGGGTGGGCTGGCTAGGGGCTTCTACGACCACCTGGCTTACCCTAATCATTCCTGTCTCCCCACAG
Seq C2 exon
TCTCACTACCGGCCATTCTATGTCAACAAAGGCAGCGGCATCGGATCCAATGAGGCACCCTGAGTTCAGCACAGAGGAGCTCCATTACCCCACCCTCCCATTGCTCCTGCTTTCCAAGCTGCTGCGCTTCCGCACGGGCAGGAACCCAGCCCCACTCTGCCCTCTCACAGCCTCTGACAGCCTTACCAGGGTACCCTAGCTTCCTCTGCTCCTTTTCTGCTTGGTGACATACAGCCGCTGTGACTTCTATGTGCGAGGCCAAGTTACCTACCATCGAGGCCCGAGACAGCTGGGTTCTGTTCTCATAGACCAGGCCCACATAGTGCCAGTCTGTCTGTCCACCTGCCGAGGCTCCGCCATGTCGGGCTTGGTGACCGTTTCCTTCCACCAGGCGCCTAATTAGGGCAGCCTCTTCACTCCCATCCCTTTGGCTCACGTTGTATCGGCAGCCCGAGCCTGTCAGAAGACAGGTCCTGTGTGTCCTCTGCATCCCCCTTACTACAGCATGGCTGGCCTTGACCATGCCTTAGGGGATGCTCTCAGTATCCTGGCTTTTTCCCAGTCTAGCCGAGAGGCTCTGCCATGTGCTCTTCGAGGCTGCAAAGCCAGAGAATAGGCTATCCTGTCTGGCGAGAGGATTGCAGCCTAGACATTTCTCCCCCATTGCTTGGAAGAGCAGTTCCCCGGATGTGCCACAATCCACTCATGAAGATTTGCCCGTAGACTTGCACTAATGTGGGAATTTGGTGCTCTTTGAGGTAATGGCCAGCAGGAGGGCTGGGAAGAGTGGTGTCACTTAAGAGGTACCACCCGGATTGGGAGAGTCGGCCTCCATCCATGTCACATGTCACCGGGCTTGGAGAGGGCCAAATCAGGAACAACACTGAGTGCTGGGAGCTTGTCTCCCACTCCAGGCTGATGGGGGCTCATGGGTCAGCTTGCAGGGGTGGGGAGGGGTACTTTTGGCTTGGGCTTCCCCCTCCCTGAATAAACCATTTGTCTCTTTATTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021771:ENSRNOT00000026170:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.388
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]