HsaINT0172264 @ hg38
Intron Retention
Gene
ENSG00000137699 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
Coordinates
chr11:120111275-120115414:-
Coord C1 exon
chr11:120115338-120115414
Coord A exon
chr11:120112477-120115337
Coord C2 exon
chr11:120111275-120112476
Length
2861 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CACTCTTGTTTCCCCCACAGTCT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCTATCCCTCCCTCATGCGGAGCCAAAGCCCCAAGGCCCAGCCCCAGACTTGGAAATCTGGCAAGCAGACTATGCTG
Seq A exon
GTAAGGGAAGTGCTGCCGGGAGGGCCTGGGCACATCCAGAGACCTGGGCACTGAAGGGGGCTCCCTGGAGGCAATCGGTTCCAGGGCCTGTGGGAGGACTTCTCTGGGCCATGGGGTGGAGGAGAAGGAGGCAGCAGTGGCCTGAATACCTGTACACAGCAGAGGGTAGTAGAGACCCAGGGCTAATGGGCAGGGGACTAGCTAAGCATACACTCTCTGGACCTCAGTTTTCTGATCTATAAAATGGGCAGCCTTGATTTTTTTATTTGGCAAATGCTTGTTGGATGCCTATGCTAGTGGAATGGCAGCTTGGGTTCTGCCAGCTCTGGGATTGTAAAACAGCCCAGTGGGAGGACAGGCCTCCTCCTAGAGATGGGTCCCACCTCCCTGGGGGCAGTTCTCCAGTTCTGACAGCATAGAGGCCATTGGGGTGATAATGTGGGGGTGGGAGAGACTGGAAAGTCGGGAATAGATATATTTAGGGTCAATATCTAATGACCCGAGGCCAGGCATATCAGAAGAGCAGCATGACAGGGAAGCATGGCTTTGGGGTCCAGGCCACCTGCTGACGGTGGGGTCCTGGATGAATTAGATACCCTCTCTGAGACTCTTCCTTGCTTTTTATTATGTGGGGACTGAGATGATCCCCAGTGCCCGTTAGATCTGACATATCTGACCCTGACTGAGACCTCAGTGATCGGGGACTGTAGTTCACATGCAGAGCCCCCATGTGCCTGAATGCCTTGCTCCTGAAGGTCCATTCTAGGCCCTGCTACAGGAGTCGGCCACTGCCGTGGCATGTGGATGGCATCAGGAGCTCTGCTGGAACCAGGGCCGGAGCCCTTGTTTCTTGCTGTCCTTGCAATTGGAGGTCAGAGCAGGAGAGGTGATTTGCCCTGGACCACAAAGAATGGCTGGGGTTGGTTTAATTGGAGAGGATCTTTAATTGCTGGGGATGGGAGCTAAGTGATCGTGTATGTAATTTGGAGCTGGACTCAGGGGCATTGCAACAGCAGGACTGCAGAAAGCAGATATGGGGAGAAAAAAGAAGGTTTCTGTTCTAGACTCAGTCCTTCCCCTCCCTACTACATACTTTTCCACCCTCTCAGAGCCTGGGGCCCTGAAGAGAAGGCTCATCAGCACTTTGAGGCCCCTGGCAGAGCAAGGTTTTGGTGTCCAGCAGGCACCCAGCACTGGGAGAGTGGAGACAGGCGCTGGGCTGCAGAGAAGCTGAGCTGGGAATCAATTTCCCTGGGGGCTGGCCCCAGCTGTCTCATTGACTTGCTGTGTGACTTTGCATGAGGAAAAATGATTCCTTTGTGCCTCAGTTTTCCCATCCATAATTAGGATGATTTTGCAGCTCTTCCACCTGCTGTATGTGCTGTGACCTCAAGCCAGGGAGGGGATGGGAGGGTGAAGGTAGCATTTTGCCCTGATGCCCACCTACCACTCCAGGCTTTTAACCAGACAATGCCATTCATTGACCTGCAACCCATATTATTGACCCAATCTTCCTCAAAGAAAGGCTTCAGCCATTTCCAAATCTGTTCACTTTGCCCTATGAATTGCTTGGGGTCCAGGCTGGCCCCTGGGGGTCAGGAGACCTGGTCCAGGCTCTGCTTTGCCAGTAAGTAGCTGTTCTTACCCCTCCCTGGGTCTCAGTTTCTTCCTTTGTTTAATAGGTGGTTTAAGCAAGGTCTGAGCATCCCTCAAGTCCTGCTGTGGACCACACAAAGGCAAGGAGCTGACCAGGAGGTGTCAGTTCCCTGAGAGACAGGGCCAAAGGCAGTGTACCCTTGAGGTGTGTGTGTGAGGGGCAAATGATGTCTCCTGTATTGGGATCTGCAGGGCATGGGAGTGGGCTCAGTCTCTGACCCAGCTCAGGGACAAATCCTCTTCCTGAGACCCCCGGGGGCTGATGGTGCTTGCGTGGGTGAGCAGCAGCTAAGCTGTGCTCTTCCACTCCATCCTGGAGGGCTGCCTCCTCAGGGCCCTGATGAAGTTATCTGGGCAGGGTGGGGCATGCTGATTTCATGAAATTACTGGGAGATACAATACATGGAGAAGGCTGGGAGAGCTGTCACTGGGCTCTCTCTCCAGAGATGCTCCCTGTACCAATGGCTGGGGGAAGAGGAACAGGACGAGAGAGGCAAAGGGCTGTGGGGAGCCTGGGACCGTGTTGGACTGGGGCAGTTCTTTACCCTCTCTGCACCCTTTCTGTAAGGGAAATTTATGCAGAGAGAGGCAAAGAAAATCCTGGAAGCCCTCACCATAAGAGAAGTGATGCCGAGAACTGGCAGCTGGGGGTGTGGGTTTTGGAGGCAGCCTGCTGGGGCTTGGATTCTGGCTCCTTGCTTACCAGCTGAGTGACCTTGGGCAAGTTGCCTAGCCTCTCTGTGCCTTGGTTTGCTCAACTATAAATTGAATATGATAATAGTAATCTATTTAATTGGGTGGTTGTAAAAATTAAATGAGTGCATCCACATACAGCCCTCGACACAGTGCTGTGAAGTTCTGTGGAGTAGAAAGTGCTATATAAATAGTAGCTGTGGTGGCGCTGGAGGAACCTCCTTGAGCTGTGGAGAGAAATTTCGACCAGTGTAATGCGGGGGCTGAGGTTCAAGCTCACCCACTAACTATGGGAATGGACTCCAATTAGGATTCCAATCTGGAGATCCTGACATTAGGGACCAGCCCCTGATCACAGGGTAGGTAAATCTTGCAGATCAGGCCAAAAAGGCCCCTAGAATTGTCGGGTCTTGGATCACTGCTGCCTCCTGAGGCAGGTTAGGGTAGGGTGGGTCTAGCTAGCAGGCTCATCTGTCGTCTGGCCTCGCTGACCACTCTTGTTTCCCCCACAG
Seq C2 exon
TCTCACTACCGGCCATTCTACGTCAACAAAGGCAACGGGATTGGGTCCAACGAAGCCCCATGAGCTCCTGGCGGAAGGAACGAGGCGCCACACCCCTGCTCTTCCTCCTGACCCTGCTGCTCTTGCCTTCTAAGCTACTGTGCTTGTCTGGGTGGGAGGGAGCCTGGTCCTGCACCTGCCCTCTGCAGCCCTCTGCCAGCCTCTTGGGGGCAGTTCCGGCCTCTCCGACTTCCCCACTGGCCACACTCCATTCAGACTCCTTTCCTGCCTTGTGACCTCAGATGGTCACCATCATTCCTGTGCTCAGAGGCCAACCCATCACAGGGGTGAGATAGGTTGGGGCCTGCCCTAACCCGCCAGCCTCCTCCTCTCGGGCTGGATCTGGGGGCTAGCAGTGAGTACCCGCATGGTATCAGCCTGCCTCTCCCGCCCACGCCCTGCTGTCTCCAGGCCTATAGACGTTTCTCTCCAAGGCCCTATCCCCCAATGTTGTCAGCAGATGCCTGGACAGCACAGCCACCCATCTCCCATTCACATGGCCCACCTCCTGCTTCCCAGAGGACTGGCCCTACGTGCTCTCTCTCGTCCTACCTATCAATGCCCAGCATGGCAGAACCTGCAGCCCTTGGCCACTGCAGATGGAAACCTCTCAGTGTCTTGACATCACCCTACCCAGGCGGTGGGTCTCCACCACAGCCACTTTGAGTCTGTGGTCCCTGGAGGGTGGCTTCTCCTGACTGGCAGGATGACCTTAGCCAAGATATTCCTCTGTTCCCTCTGCTGAGATAAAGAATTCCCTTAACATGATATAATCCACCCATGCAAATAGCTACTGGCCCAGCTACCATTTACCATTTGCCTACAGAATTTCATTCAGTCTACACTTTGGCATTCTCTCTGGCGATGGAGTGTGGCTGGGCTGACCGCAAAAGGTGCCTTACACACTGCCCCCACCCTCAGCCGTTGCCCCATCAGAGGCTGCCTCCTCCTTCTGATTACCCCCCATGTTGCATATCAGGGTGCTCAAGGATTGGAGAGGAGACAAAACCAGGAGCAGCACAGTGGGGACATCTCCCGTCTCAACAGCCCCAGGCCTATGGGGGCTCTGGAAGGATGGGCCAGCTTGCAGGGGTTGGGGAGGGAGACATCCAGCTTGGGCTTTCCCCTTTGGAATAAACCATTGGTCTGTCACTTCTCTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137699:ENST00000341846:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains