MmuINT0165092 @ mm10
Intron Retention
Gene
ENSMUSG00000032013 | Trim29
Description
tripartite motif-containing 29 [Source:MGI Symbol;Acc:MGI:1919419]
Coordinates
chr9:43332310-43336115:+
Coord C1 exon
chr9:43332310-43332386
Coord A exon
chr9:43332387-43335109
Coord C2 exon
chr9:43335110-43336115
Length
2723 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCATTCCTCTCTCCCCGCAGTCT
3' ss Score
12.21
Exon sequences
Seq C1 exon
GCTTTCCCTCCCTCCTCCGGAGCCAAGTTCCCAAGGCCCAGCCTCAGACTTGGAAATCTGGCAAGCAGACTCTGCTG
Seq A exon
GTGAGTACGGCGTACCGGGAGAGTTGCCAAACATAGGCATGTCCAGGGACCTGGCAACTGAGCAGGCTTCCTGAGTCTGTTTGACAAGAGTGACTTTTCTGGGCCATGCTGGGAGCATAGGAGGCAGCAGTGACCCTTACACCAACATGTAGCAAAGATAGAGAAATGGACTTACAGGCAGGGGACCAGTAACTGCACACTGCCTTTGATCTCAGTTTAGAACCTGTAACACACGCATCCTATGTTTGTATTTGCAAGTGATCACTGAGTATCGATGGTGGCTTGGTCACCAAGAGGCATGTGATTGTGATGGGTGTCACTCCTAGGGCTACTTTCTATTTCTGACAGCATTGAGGCCATTAGGGGTGATGGTGTGTGTATGGGGGCCGGGGAGCTAGAAAGCTAGAAAGGTATATTTAGAATTTACTCTCTAATAACTCTAAGCTGGGGCTATTAGAAAGCAGCACTGGAGGGAGGATGTGGCCGAGGGACGGAGACTATCTGCTGGCATCTCAGAACCACAGACCCTTTTCAAGACTCTCTTCATTCTTGTATTTATGGGTACACTGTCACTGTCTTCAGAGACACCAGAAGAGGGCACCAAATCCCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCACTGGAAGAGCAGTCTGTGCTCTTAACCAGCGAGCCATCTCTCCAGGCCTTCTCTTCATCCTTATAACGTGATGATGAGACGAAGTGCCCCCCCCCCCCTTGTGGACCGACAGTCTTATCCGTGCCTGGGAATAGCATTGATCACAGACTGCCACCCTGGAGGCTTCATTTCCCCTAATGCTTCCCTCTCAACAGCTTGCTAGGTCCTGAGAGGTCATCCAGTGAGCCATGCAGGTAACACCAGGGTTTTGTTGAGATGGGGGTGGGGGATGGGGGTCAGAGCCCTCCCTTCAGCTGCTTTTGCATTTTGAGGTCAGAGCACGAGATTTACTCTGTTCTACAAAGAGCGGCTGGGGCTGGTTTAATTGAAAAAAGTCTTTAATTTGTGGGCGAGAAGAGCTAAGCGATTGCATGTAATGCGGAGCTGGGCCCAAGGGCGTTGAAGCAGCAGGACTGTGGGAAACAGATAATGGGAGAGAGTTATCCCTCTCCCTCCTATGCACCTTCCTGGCTCTCCAGCCTCGGAGGCTCCAGCAGGACAAGGCTGTGCTGTCCTACTGTGACACCTAGTGTTGGGAGGATAGAGGCCAGTGCAGTAGGAGGCCTGAGAGCCAGGCTGCCTTGTGCCTAGGCCCCAGCCAGCACCAGCTTCCTATGTGATATTGTGTGAGTCGATCTTCCATGCCTCAGTTTCCCCATTTCTAACATGAATTCTGCAGTTTGGGTGATCTCATAGTCCTTGTGACTCTCACATGTGGTGACCCTAACTAGGGAGGGATGGAAATGAGCACCCCACTCACGCCCCCTGCCCCTCAGACAGCTCTCAGACAGCAACATTGTTCACTGGCCTGCAATCCATACACTATTGACCCAGCCTTTCTGAAAGACAAGTTCTCGCCTATTCACCTTACCCAAAGCATGGTGGACTTCTTTGGGGGCCCTGGAATGGACCTGAGGGTTAGAGAGACCTGGCTCCAGGCTCTGCTCTATTAGAGCAGCCCTGTAACTTTTTGTCAATGCCCTGTTTTCCTTCTGGGGCCTTAGTTTTGTCTTCTATGAATCAATGGTTTAGCCGGAGTCTGGGCTGAAGACCCTCCTGCCCTGGCCTTGCCTACGCCTGACTTCTACTATGCAAGAGTGTCAGACCAGAGCTTCTGGGAGGCCCGTAGAGGCTCTGTGCCTGACCCACTTAGGGACAAGGCTGATTCCTGAGACCCTCCAGAGGCTGGCAGTGCTTGTACTGGCCAGGGGCAGCTCTTTGCTCTTCCATGCCAGTCTGGGGGGTGGGGTGGGGGACTGAGTTCTCAGTGGGGGTTAGGAGGAAGGGAGAAAGGGGCTGAGTTCCCTGAAATTGCCGTATGACATGATTCAAAGAGGAGGTTAGGAAAGCTCTGGCAAGAGAGGCTGGAGCTCCACAATTGTGGATGGTGGGGAGGGAGCACAGCGGAGGGAGGACCTGGCATAGTGGTGTGCTCATTCTGTACCCTTCTGTCAGCGAGAATCAGCAGAGAGAGCATAATCCAACACATGAAGTACTTGAGACACAAGAATAATACCAGGAAGTGGAGTGGAGCAGGGGGTGATGGGGTTTGGAGTCCAGTCTCTGGGTCTCTCATCTTGTTCCCCCGTTCAACTAGCTGGTGACTTAGGCAAGCTGCCCAGCCTCTCTGTGCCCTGGTTTGCTTACTTACAAAGTGGCTGTGCTCAGAGTCGCCTGTTTAATTGGACGGTTGTAAAACCTAATTGAGTCTGTCGATGGCAAGCCCTTGGCACGGTGCTGTGTAGTTTTGTAGAACACAAAATGCTATAGCACACGGTGGCTGTGGTGACATCAGGATATTGGGTGGGTGGGTGGGGCAGGGGATGATGTCCAAGCTCATATGCTAAGTGGCAGGGACAGACTCTAGTTAGAATTTGGACCCAGAAGTTATGCTATTACCAGCCATCTCCTGGTAGCAAGATAGGTAGATCTTGCAGGCTGCTTCAGAGTCTAGGTTGGGTGGGCAGGTTAGGGACTTCTCAGACCACCCAGCTATCCTAACCATTCCTCTCTCCCCGCAG
Seq C2 exon
TCTCACTACCGGCCATTCTATGTCAACAAGGGCAGCGGCATCGGATCCAACGAGGCGCCCTGAGTTCAGGATGGAGGAAGCTGCACTCCCCCATCCTCCTGTTGCTCCTGCTTTGCAAGCTGCTGTTCTTTCTCCCGGGCAGGAGCCCAGCCCCACCCTGCCCTCACACAGTCTCTGGCAGCCCTACGGGGCACTCTTGCTTCCTCTGCTCCTTTCTGTTTGGTGACAGACAGTCACTGTGACTTCTAGGTATAAAGCCAAGAGACCTACCACAGGGGCATGAGCCAGCTGGGCTCCTTTCTCATACACTAAGCCCACACGGTGCTGGTCTGTCCACCTGCCCAGGCTCTGCCACATCAGGCTTGGTGACCATTTCCCTCCACTAGGTACCTAGTTACGGCAGCCTCTTTGCTCCCGTCCCTTGGGCTCATGTTGTATTGTCAGCCTGAGCCTGTCAGGAGGAGATGGGTCCCGTGTGTCCTCTTGCATCCACCTTACTACAGTATGGCTGGTCTTGGCCACGCCTTAGAGGATGCTCTCAGCATCTTGGCTTTTTCCTGGTCCAGCAGAGAGGTTCTGCCATGTCCTCTTTGAGGCTGCAAAACCGGAGAACGGGCTGTCCTAACTGGCAAGAGGATTGTAGCCTAGACATTTCTCTGCCATTGCTTGGAAGAGCAGTTCCCCAGGTGCGCCACAATCCACTCATGAAAATTGGCCTATAGACGTTCACTACTATGGGAATTTGATGCTCTTCACGGTAATGGCCAGCAGGAGGGCTGGTAAGAGTGGTGTCACTTAAGATGTACCATCCGTATCAGGAGAGCCAGCCTCCATCCACGTCACATGTCACTGGGCTTTGAGAGAGCCAAATCAGGAACAGCACTGGATGTTGGGAGCTTGTCTCCCACTCTGGGCTGACGGGGCCTCATGAGCCAGCTTGCAGGGGTGGGGAGGGGCACTTTTGGCTTACGCTTCCCCCTCCCTGAATAAACCATTTGTCTCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032013:ENSMUST00000034511:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.450
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types