HsaINT0172264 @ hg19
Intron Retention
Gene
ENSG00000137699 | TRIM29
Description
tripartite motif containing 29 [Source:HGNC Symbol;Acc:17274]
Coordinates
chr11:119981994-119986122:-
Coord C1 exon
chr11:119986046-119986122
Coord A exon
chr11:119983185-119986045
Coord C2 exon
chr11:119981994-119983184
Length
2861 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
CACTCTTGTTTCCCCCACAGTCT
3' ss Score
9.9
Exon sequences
Seq C1 exon
GCTATCCCTCCCTCATGCGGAGCCAAAGCCCCAAGGCCCAGCCCCAGACTTGGAAATCTGGCAAGCAGACTATGCTG
Seq A exon
GTAAGGGAAGTGCTGCCGGGAGGGCCTGGGCACATCCAGAGACCTGGGCACTGAAGGGGGCTCCCTGGAGGCAATCGGTTCCAGGGCCTGTGGGAGGACTTCTCTGGGCCATGGGGTGGAGGAGAAGGAGGCAGCAGTGGCCTGAATACCTGTACACAGCAGAGGGTAGTAGAGACCCAGGGCTAATGGGCAGGGGACTAGCTAAGCATACACTCTCTGGACCTCAGTTTTCTGATCTATAAAATGGGCAGCCTTGATTTTTTTATTTGGCAAATGCTTGTTGGATGCCTATGCTAGTGGAATGGCAGCTTGGGTTCTGCCAGCTCTGGGATTGTAAAACAGCCCAGTGGGAGGACAGGCCTCCTCCTAGAGATGGGTCCCACCTCCCTGGGGGCAGTTCTCCAGTTCTGACAGCATAGAGGCCATTGGGGTGATAATGTGGGGGTGGGAGAGACTGGAAAGTCGGGAATAGATATATTTAGGGTCAATATCTAATGACCCGAGGCCAGGCATATCAGAAGAGCAGCATGACAGGGAAGCATGGCTTTGGGGTCCAGGCCACCTGCTGACGGTGGGGTCCTGGATGAATTAGATACCCTCTCTGAGACTCTTCCTTGCTTTTTATTATGTGGGGACTGAGATGATCCCCAGTGCCCGTTAGATCTGACATATCTGACCCTGACTGAGACCTCAGTGATCGGGGACTGTAGTTCACATGCAGAGCCCCCATGTGCCTGAATGCCTTGCTCCTGAAGGTCCATTCTAGGCCCTGCTACAGGAGTCGGCCACTGCCGTGGCATGTGGATGGCATCAGGAGCTCTGCTGGAACCAGGGCCGGAGCCCTTGTTTCTTGCTGTCCTTGCAATTGGAGGTCAGAGCAGGAGAGGTGATTTGCCCTGGACCACAAAGAATGGCTGGGGTTGGTTTAATTGGAGAGGATCTTTAATTGCTGGGGATGGGAGCTAAGTGATCGTGTATGTAATTTGGAGCTGGACTCAGGGGCATTGCAACAGCAGGACTGCAGAAAGCAGATATGGGGAGAAAAAAGAAGGTTTCTGTTCTAGACTCAGTCCTTCCCCTCCCTACTACATACTTTTCCACCCTCTCAGAGCCTGGGGCCCTGAAGAGAAGGCTCATCAGCACTTTGAGGCCCCTGGCAGAGCAAGGTTTTGGTGTCCAGCAGGCACCCAGCACTGGGAGAGTGGAGACAGGCGCTGGGCTGCAGAGAAGCTGAGCTGGGAATCAATTTCCCTGGGGGCTGGCCCCAGCTGTCTCATTGACTTGCTGTGTGACTTTGCATGAGGAAAAATGATTCCTTTGTGCCTCAGTTTTCCCATCCATAATTAGGATGATTTTGCAGCTCTTCCACCTGCTGTATGTGCTGTGACCTCAAGCCAGGGAGGGGATGGGAGGGTGAAGGTAGCATTTTGCCCTGATGCCCACCTACCACTCCAGGCTTTTAACCAGACAATGCCATTCATTGACCTGCAACCCATATTATTGACCCAATCTTCCTCAAAGAAAGGCTTCAGCCATTTCCAAATCTGTTCACTTTGCCCTATGAATTGCTTGGGGTCCAGGCTGGCCCCTGGGGGTCAGGAGACCTGGTCCAGGCTCTGCTTTGCCAGTAAGTAGCTGTTCTTACCCCTCCCTGGGTCTCAGTTTCTTCCTTTGTTTAATAGGTGGTTTAAGCAAGGTCTGAGCATCCCTCAAGTCCTGCTGTGGACCACACAAAGGCAAGGAGCTGACCAGGAGGTGTCAGTTCCCTGAGAGACAGGGCCAAAGGCAGTGTACCCTTGAGGTGTGTGTGTGAGGGGCAAATGATGTCTCCTGTATTGGGATCTGCAGGGCATGGGAGTGGGCTCAGTCTCTGACCCAGCTCAGGGACAAATCCTCTTCCTGAGACCCCCGGGGGCTGATGGTGCTTGCGTGGGTGAGCAGCAGCTAAGCTGTGCTCTTCCACTCCATCCTGGAGGGCTGCCTCCTCAGGGCCCTGATGAAGTTATCTGGGCAGGGTGGGGCATGCTGATTTCATGAAATTACTGGGAGATACAATACATGGAGAAGGCTGGGAGAGCTGTCACTGGGCTCTCTCTCCAGAGATGCTCCCTGTACCAATGGCTGGGGGAAGAGGAACAGGACGAGAGAGGCAAAGGGCTGTGGGGAGCCTGGGACCGTGTTGGACTGGGGCAGTTCTTTACCCTCTCTGCACCCTTTCTGTAAGGGAAATTTATGCAGAGAGAGGCAAAGAAAATCCTGGAAGCCCTCACCATAAGAGAAGTGATGCCGAGAACTGGCAGCTGGGGGTGTGGGTTTTGGAGGCAGCCTGCTGGGGCTTGGATTCTGGCTCCTTGCTTACCAGCTGAGTGACCTTGGGCAAGTTGCCTAGCCTCTCTGTGCCTTGGTTTGCTCAACTATAAATTGAATATGATAATAGTAATCTATTTAATTGGGTGGTTGTAAAAATTAAATGAGTGCATCCACATACAGCCCTCGACACAGTGCTGTGAAGTTCTGTGGAGTAGAAAGTGCTATATAAATAGTAGCTGTGGTGGCGCTGGAGGAACCTCCTTGAGCTGTGGAGAGAAATTTCGACCAGTGTAATGCGGGGGCTGAGGTTCAAGCTCACCCACTAACTATGGGAATGGACTCCAATTAGGATTCCAATCTGGAGATCCTGACATTAGGGACCAGCCCCTGATCACAGGGTAGGTAAATCTTGCAGATCAGGCCAAAAAGGCCCCTAGAATTGTCGGGTCTTGGATCACTGCTGCCTCCTGAGGCAGGTTAGGGTAGGGTGGGTCTAGCTAGCAGGCTCATCTGTCGTCTGGCCTCGCTGACCACTCTTGTTTCCCCCACAG
Seq C2 exon
TCTCACTACCGGCCATTCTACGTCAACAAAGGCAACGGGATTGGGTCCAACGAAGCCCCATGAGCTCCTGGCGGAAGGAACGAGGCGCCACACCCCTGCTCTTCCTCCTGACCCTGCTGCTCTTGCCTTCTAAGCTACTGTGCTTGTCTGGGTGGGAGGGAGCCTGGTCCTGCACCTGCCCTCTGCAGCCCTCTGCCAGCCTCTTGGGGGCAGTTCCGGCCTCTCCGACTTCCCCACTGGCCACACTCCATTCAGACTCCTTTCCTGCCTTGTGACCTCAGATGGTCACCATCATTCCTGTGCTCAGAGGCCAACCCATCACAGGGGTGAGATAGGTTGGGGCCTGCCCTAACCCGCCAGCCTCCTCCTCTCGGGCTGGATCTGGGGGCTAGCAGTGAGTACCCGCATGGTATCAGCCTGCCTCTCCCGCCCACGCCCTGCTGTCTCCAGGCCTATAGACGTTTCTCTCCAAGGCCCTATCCCCCAATGTTGTCAGCAGATGCCTGGACAGCACAGCCACCCATCTCCCATTCACATGGCCCACCTCCTGCTTCCCAGAGGACTGGCCCTACGTGCTCTCTCTCGTCCTACCTATCAATGCCCAGCATGGCAGAACCTGCAGCCCTTGGCCACTGCAGATGGAAACCTCTCAGTGTCTTGACATCACCCTACCCAGGCGGTGGGTCTCCACCACAGCCACTTTGAGTCTGTGGTCCCTGGAGGGTGGCTTCTCCTGACTGGCAGGATGACCTTAGCCAAGATATTCCTCTGTTCCCTCTGCTGAGATAAAGAATTCCCTTAACATGATATAATCCACCCATGCAAATAGCTACTGGCCCAGCTACCATTTACCATTTGCCTACAGAATTTCATTCAGTCTACACTTTGGCATTCTCTCTGGCGATGGAGTGTGGCTGGGCTGACCGCAAAAGGTGCCTTACACACTGCCCCCACCCTCAGCCGTTGCCCCATCAGAGGCTGCCTCCTCCTTCTGATTACCCCCCATGTTGCATATCAGGGTGCTCAAGGATTGGAGAGGAGACAAAACCAGGAGCAGCACAGTGGGGACATCTCCCGTCTCAACAGCCCCAGGCCTATGGGGGCTCTGGAAGGATGGGCCAGCTTGCAGGGGTTGGGGAGGGAGACATCCAGCTTGGGCTTTCCCCTTTGGAATAAACCATTGGTCTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137699-TRIM29:NM_012101:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF100184=Med4=FE(8.4=100)
A:
NA
C2:
PF100184=Med4=PD(1.7=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)