GgaINT0138253 @ galGal3
Intron Retention
Gene
ENSGALG00000006722 | TRIM29
Description
NA
Coordinates
chr24:3923791-3927170:+
Coord C1 exon
chr24:3923791-3923820
Coord A exon
chr24:3923821-3927107
Coord C2 exon
chr24:3927108-3927170
Length
3287 bp
Sequences
Splice sites
5' ss Seq
TTGCTTAGA
5' ss Score
-7.07
3' ss Seq
CCCCAAATTCTCCATTGCAGTCA
3' ss Score
7
Exon sequences
Seq C1 exon
ACATGGAAATCCTCCAAGCAATCTGTATTG
Seq A exon
CTTAGAAACGAACCCTGGGGGTGAAAGCTTCAGCAAAGGAAATATCTGTTCTCGGGGGACCTGGGACTCCAGAGAATAGGGCTTTGGTCCTTTGGAAATGGGCAAGTGAAAGGTTCAGGTCAGCAGCTCCTATTGTTTTTTTCTATGGTTAGCTGCATCCAGAGAGGGATGCAGGCTGACCTCCCCTGCCACCACAGGGCTGGGATGTAGGGGTAATCAATATTTCAAAGTGACATTTTGAAAGGATTTTGCCCTCGTCTAGAATTTGATCCAGGCTTCTAAAAAGCCATACAAACATTGCGGAAGACACGCTGGAATCTGTAGAACGTTTTCTTCCTGCATGGATATCATACACTCTTAATAGACTTTGACAACAAGAAAACACAGATTGTGTAAATAACTCCAACAGAGAACCGTATAGAAGCACTATACTAATTACATCCTACAGTGAGCAGGCGCAATATCAAAGACGAGGGGTCAGACAATGATGATAAATCACTACAACAGCTGTAAATGGCTCAGTTAGCACCACTGCCACAACACAGGCAACAGCACACGGCGAGGGCCAGAGGAACCGTAGTGCTGTAGTTCTCACGTGCAAGGTTAACAAAGAGTTAACCACAGAAGCACTGTGTTTATCCACTGTGTCTTAGCATCTCTCTGCACCACGATGCATTAAGATCTTGCACAAGCTGAGTTAAGGACGTCAGGTTTTTGCCCTCGTTGAATTCTCATTGTGCATTGGTGAGACATTATTTACTGCTCTCTGGAAATAATGCTTGTAAGGAAGAGGAGGCCAGGAGTCAAGAGCATTCCCAGACTGGAGGATGCAAACAGAAGGAATACACAGCAGGGAGAAAGGAGCTGCCCAAGGACTGCAGCTCTACGTCCGCTCCATTTTAAAGGCCCCTCCAGGAGATGAACAGCAGTGCAAGGGACATCCCATGTTAGGCTGTAGCACCTTCAGAAAATCCAGCCTTGAGTATCTGAACGTGTGACAGCAAAAACACATCTAGGAGCAGCAGTGAGATGCAATATCTTCTCTGTCTTGTGTTTGGTCACTGCCTTTCTGAAAGATCCCTGACTTCATCATGAGTGTGCCCACGTGGACACTCCAGCCAATGGTTTTTGATGCTGACCCAACACCCACTTCCCTTCATCCCTGCTGAGAAGTCCTGGTGACTTCTCCCACCCAAAGCCACCGCTCTTTTTGTCTCCTTCATGCATACGCTGGTGCTGGCTATTCTGTTTTTATGGCCTATATTCACCAGATATCCCTGAATCTAACAATCGAGTTGATAAATACAAGCATTAAGAAGTCCCAACATAGAAATATACACTCCGGGCTGCAATAGCTCTGCGTGAGCTTTTATGGTCTATTGGCCCAATAATCTGGCTTTTAAAGTAGTCTTAAATATGTATTTAAGTAATACACATCCTAAAAGGTCCGTAAATACAAATGCTCACAAAGAACTCCACTGTTTCAAGGAGGAAAGTCTTTTCAACCCAGAGGGACCTCTCTAAAATGAAGGAGCCCTCCTCCGTCTCCTAATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCCTGATTGCCTTTGTCAACCACTTCCCTGGTGTAAGCACGTTCTCGTGTCACCTTGGTGCTCCTCAATGGCAGTATCCAAGCCACTGTGTGTAGGAGGTTGCTTGTAAGAGGAGCAATAGGGGTTAACCCTCAAGTTTAAAGCTCTGCAGTGCAGGGGGCAGCAAAGGTGAGGAAGAACTGATTGATTGCCTCAGTATTGGTGGATGCAGGCTAAGGGTTTCACCTTTCAGTCAGTCAATAAATGGGCTTTTGTGTTCTGCAGTCACCCCCAGCCAACAGTAGGCTGCACAACACACCTTTGCCACAAGTTGCTTGTTTGTGATGGTGTAGATAAGCATGAAATTGCTGGGGTGGGTCATGAGGAGAAGAGGTGCAACTGGAGGCTGTGGTAATAGGGCTGGAGACAGAGGAACGTGGCAGCTCCCCTAGGCTCTGCCCTTATGTCTCTTCCACTTATGCTTCTGCTTACCCAGACTTTTACATGGGGCCCTGCAACACGTGGAGGTGCAAATAAGCAATACTCCATCGTGGGAGAATTTCCATGCACAAGAATTTTGGTTCTCCAGACAAGCACTGTGCAGCATAGCCCATTGCTCACATAACTGTGCGTGGCTTTAAGTGTGAAAGCTCCCATGAGTTCTCAGGTTAGCGAGCAATTAAAAGACACTGACAGAAGCATAAAAATAGAGGTGACATTCCTCTTCTCCCAGAAACCTCTCATCAAACCATGAGTCACAGTCTGAGAGCTTATATCATGCACAGCCTCATTTGGCTTAGGCATGATGTCCATGCAAAGCATGCGTGCAAATCAAACAGCATCACCATTTGCATTTGATGGCTCCGGCAGAGAAAGGAGGTGGTGCTGCCCTGCAGGACTGAAGGTGTTAAGATAGGAGTGTGTTAAATCACAAATGGTTGGGCTGCCGAGGAGGGTGAAGTATAAGTGGCCAGAAAAAGACGGAAGGTCAAACTTAATGCCCCAAATTCTCCATTGCAG
Seq C2 exon
TCACATTACCGCCCCTTTTACGTCAACAAAGGCAATGGAGCCACTTCCAACGAGGCACCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006722:ENSGALT00000040837:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.525
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]