BtaINT0154286 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12508677-12510402:+
Coord C1 exon
chr22:12508677-12508780
Coord A exon
chr22:12508781-12510213
Coord C2 exon
chr22:12510214-12510402
Length
1433 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GAGTTTCCTGGTTTCCCTAGGCC
3' ss Score
9.02
Exon sequences
Seq C1 exon
TCAAAGACATCCCATCCATGATGAATGATGTCAAGTGCTTACTTTTGCTGGCCAAGGTTTACAAGAGTCATAAAAAAGAAGATGTGACGGAAACTTTGAACAAG
Seq A exon
GTAATTGACAAGTAGATCTAAGCTGTCTATCTGCCATTTCCTGATGGAAGCTGGAGATAGGACTGCAGGTCTGGAAGTCTCCAGGCGTGGTCGTCTAGAGAGGATCCAGGTTACACCCCTGACATCCACCTTCCACTTATCCCCCCACCCTTGCTCTCGTATTGATTATGCACGGAAGTGCTCAAAACCCGCCTGGGCTGGACTGGAGAAGGCAGGGAGGAAGACAGTGCCTTTGTCCTCAAGGATGCTTGTGCTGTTATTAATAAACAATGCCAGCAGCTCTCACGCACTGAATGCTCTGTGCTGAGTTCTGTACTAGGCTTTTTGACTTATTTAATTCTCACAGTAGCTCTTTGAGCTAAGCACTGAGGCATTCCTGTTTAACAGATAAGGCTCAAAGAGGTGAAGAAATGTACCCAAAGTCACACTGCTAGTAAGTGGTGGAGCTGAGATTTGAACCAGCTTTGGCCTGTCCCAACCCATAGTCTACCGCTGGGAGCACTGTGTGCTTGCTAAGTCGCTTCATTTGCGTCCGCCTCTTTGCGACCCTCTGGACCATAGCCCACCAGGCTCCTCTGTCCATGGGATTTTCTAGGCAACGAGAGTGGAGTGGGTTGCATGCCCTCCTCCAGGGGATCTTCCCAACATAGGGATTGAACCTGCCTCTCTTACGTCTCCTGCACTGGCAGGCAGGTTCTTTACCACGAGCGCCACTGAGAAGCCCCTGCTAGGAGACTCCTGGCCGTTTTTTCCCTTCCTCTTCACTCTGTACCCAAAGGTGGGGCCTGGCACTTGCCCCTGGGGCGTGTGCCTGTGGTTGTAGATCGTCTCTGACTGCTTGATGTGACTTATCCTTGGGGTTTCCCACTGGATTTCCATTCCTCAGTCTGGCCTTCGGGGAACCCAGGGCTGATCTGTAACCACTACCCAAAACTTAACCCTGGCCTCATTGTTTCCTCTTGCCCCAGTGCTCTCTGGCTACTCACTTAATCACTGTTATGTCACGGCTATTTGTGGGGGCTGCCTCAAATTCCCAGCAGGACACTATTCAAAACAAACGCACCCAACAAAACACGGCCTGTGCTGAACACCTACTGTGTGCCTGTTCCAGCCTATCGGACAGCTGAGGTAGATCAGAGACAGTGAGTGCCAGGTGTGATGGAAACAGGTAAATGAGCCGAGTACAGTGGAGTGTTCTGTTGCTTGAGAGCCTTTGCCCTGCTCCTGCCCCTGCGGCAGTACCGGTTTGCCTCCTGGTGCTCAGCCAGCAGCCTTGCCTGTCCAGAGCGACCCAGATTTGCTCAGGGGGACCTGAGATGCCCTTCTTAGACAGCTAGCTCTGAGATGAGAGCTTGGAGGCTTGCTGTGAATTGGCCTGAGACCTGGCACATCAGGCTCTGGGTTGCTCACGCAGAGTTTCCTGGTTTCCCTAG
Seq C2 exon
GCCATGGACCTCCAGTCTCGGATCCTGAAGCGTGTTCCCCTGGAGCGACCGGAAATGATCCCCTCCCAGAAGCAACTGGCAGCCTCCATCTGCATCCAGTTTGGGGAATACTACCTGGCAGAGAAGGAGTATGCCAAGGCAGTGCAGTCTTATAAAGATGCCCTCTCCTACACGCCTATTAACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(36.8=39.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGACATCCCATCCATGATGA
R:
TTAATAGGCGTGTAGGAGAGGGC
Band lengths:
286-1719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]