RnoINT0157549 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128647530-128650756:+
Coord C1 exon
chr8:128647530-128647636
Coord A exon
chr8:128647637-128650567
Coord C2 exon
chr8:128650568-128650756
Length
2931 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
ACCTCATCCGTTCCCCCAAGGCC
3' ss Score
7.05
Exon sequences
Seq C1 exon
GGGTCAAGGACATCCCGTCCCTGATGGATGAGGTCAAGTGCTTGCTTTTGTTGGCAAAAGTTTACAAGAGCCATAAGAAGGAAGACGTGATGGAAACGCTGAACCAG
Seq A exon
GTAACTGGCCTTTATTTCCTGAGGGCTGCGGAAGGAAAGGGGCTCGGCCCACAGTCGGCCAGGGGCCCATGGTCTGCCAGGGCAACAGGGCCCACGGTCGATCAGGGCGACGGGGCCACCATCAGTGATGGTGAATCTGAGAATACTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCCAGAAGCAAGAGAGGCTTGTCCTTACCGAGGGTGATGTGATCCAAGGTGTTACAGCAGCTGTCTGCATCGAAAGCTCTGTGCTAGCTTTGTTTGCCCCTCTCTCCTCCCGCAGTCCTTCCTCCTGCTCTCCCACGCTCAGTCCCTCCCTCAGTCCCTCTCTTCCTCCCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCCTTCCTTCCTTTTGAGAAAGGGGTATCCCAGCTCGCCTACCTAGCTGAAGATCGCCTTGAACTTCTGATGTTCCCGCTTCTCTCTCGAATGCTGGGATTTCTGCAGTTTTTCCACCACACCCTGCTTTACTGAAAGATCTCACTATGTAGAGCTAGCTGGCCTAGAACTCTATGTAGCCCGAGCTGTAGACTATGCTGGGTTAAAAGCATGAATGACCACGCCTGGCTCTAGCCATTCCGCCCCCCCCCCCCAACCAATATTTATCTAATGCGTGTGGGTATTTTGTCTGCATGTCCATCTGCACCCCAGAAGAGGGCGCCAGACCATATTATATTGTGAGCTGCCCGTATGGGTGCTGGGAATTGATCAGAAACCGTGGAAGTACAGCCAGTGCTATTAACCACTGAGCCATTTCTCCAGCCCTAGTCTAGCTAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTTAGTATGTTTACCAGGCTGGTCTTGAATTCACTATGTAGCCCAGGCTAGCCTTCAGGTAGTCCTCCTACTGAACAGTAGTATCCCAGGTGAGCATTACTACCTATGTCTGGCTTCTCCACTCTCTTTTTAAAATTCCACCGCAGCCCTCCAGGCTAAACACTGTGACACCCCCATCTGATAGATAAAGCTCAAAGGCAAGAAGGCTTAAATCCAAAGCCAAGTACAGATGTCTAGGGCTTATGGTGGTTTAACTCGGAGTTCTAGGATTTTTAATAGTGTGAAATTGGTGTGCACTGGATAGAAACTGCTCTGAGTCTTTACTTTTCCTGGGCTGGAGGTCCATGATGCTGCCTCGGATGCCAGCGGCTGTGAGCCACAGCTTCCGATTGGCCGCTCCCTCTCAGGCTGTGTGACGTTCTGCAGTGCGACCGTTGCTGAGCTGCTATACCCAGCGGGCTAGGGACATACAATGTGCTTTGTATTTTATCTGTCTGTTTATCTACCCACATGTATGTGCACCACCTGTGTGCCTTATGCCTGCGGAAACCAGACCAGGGCCTTAGATCCCTCGGAACTGGAGTTAGAGGCGGTTGTGAGATGCCCTATATGGGTGCTGGAAACTGAACTCAGATGTTCGACAAGAGCACCGTGTGCTCTTAACTGCTGAGCCATGTCTCCAGCCCAAGGATTTTGATTTTTTTTTTTTTTTTTTTGAGACAGGATCTCATTGTGTAGTCCTGGACGGCCTAGTACTTGCTGTATAGACCAACAGTTCTCAATCTTTGGGTTTCAACCCCTGTAGGGGTTGAATGACTCTTTCACAGGGGTCACCTTAAGGCCATTGGAAAATACCAATATCTACATTACACTTCATAGCAGTAGCAAAATTACACTTATGAAGTAGCAATGAAAATAAATTTATGGTTGGGGCCACCATGACATGAGGAACTGCATTAAAGGGTCCTGCAGCATCAGGAAGGTTGGGAAGCCCTGAAATAGACTAAGCTGGGCTTGAACTCAAAGATCCCTCTGCGTCTGCCTCCCAAGTGCAAGGGTTAAAGGAGTGTGCCAGCACAGGAAGGGAGCCCAGTGTGTCCTTTGCTTGTATCCCCCTTATAATGGGTTCACCTTAAGTCAAGGGAGGTGAAGCTGAGATCTGACATCTGCCTGGACCAACCATCTTCTCTCCATACCGAGCCATCCCTGATCCAGGCACCCCTGGCCATTCCCATTCCTGCCTTGCCTCTCCACCCACAAGTGCAGGCTCCCACTTGTTCCCAGGATGCATTGCACTGTGTGTGGTTCTAGAAGGAGGCACTGCCAGTGCCACCACTTGAGGTGACTTCTCTTATTTACTGCCCCAGTCCCCACTCCTCTCTCTGCCATTGAGGAGCCCAGTGCTAGTCCGTACGCCTTCTGAAACCTGCCTGTCTTCCATGCTCCTCACCTCATCCACTCACGCGTTAGATGTGTGAGAAGTGCCTCCACTTCTAGAAAGGAGGGTGGAACAGAGCAAAGGTACCCATCAAAGCACAGCCCACAGACACACACACACACAAAGCCCTCGGTTCTGTCTCCAGTACCACATAAACCAGGCCTGGTGGCACTCGGGATCAGAGGTTCAAAGCCATCCTTGATTATATAACGGTTTCCAGGCCAGCCCTTCTCAAACAACAAAGACCTAGTCTGAGCTAGGTGTGGTGACCCGTACCTTTGATCCCAGCACTCTAGAGGCAGAAGCAGGCAGATAGAGCTCTGTGAGTTTGAGGCCAGCCTGGTCTACCAAGTTCCATATCAGCGAGGGCTACAAAGGGAGGCCCTGTCTCAAAAATAAAGCACCACCAGCAGAGGGCGTGGCTGTGAGTTCCTCGCGGTGCCCTTTCTGGCCCTGCCAGCCGTGGAACACTGGAAATCCTGTGCTCTGGCACATGGGTTCAGGGTTTCTGAACCCAACCTCATCCGTTCCCCCAAG
Seq C2 exon
GCCTTGGACCTCCAGTCCCGCATACTGAAACGGGTTCCTCTGGAGCAGCCAGAAATGATCCCCTCCCAGAACCAGGTGGCAGCCTCCATCTGCGTCCAGATTGGAGAGCATCATCTCGCGGACAAAGATTACGACAGCGCTATGAAATCCTATAAGGACGCCCTGGCCTACTCACCTACAGACAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(49.3=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.0=7.9),PF145591=TPR_19=PU(36.8=39.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]