BtaINT0154301 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12494692-12496881:+
Coord C1 exon
chr22:12494692-12494776
Coord A exon
chr22:12494777-12496782
Coord C2 exon
chr22:12496783-12496881
Length
2006 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
GTTGTGTTTTGCTCTTGCAGGCT
3' ss Score
10.29
Exon sequences
Seq C1 exon
AATCCTCGAAAAAGACAAAAGCAATATCGATGCCTGCCAGATTCTAGCTGTGCATGAGCTCGCAAGAGAAGGAAACATGACCGTA
Seq A exon
GTAAGTTCTTTCAAGACTCAGAAGTTGAACCTTGAAACCAGCCCAGCCAAGGAGGGACCCTTCACAGCACCTCCACCCCCAAGACCTTGGAGGGGGCTCCCTGGGACTCAGCTCCCTACGCCCATCCACACACTCGGAGCTCTGGCTTGGTCTTTGAGCCACACAGTTCCAAAGGCCGGCAGTGAGGCTGACACGCTGCTCTGGTTCTGCCTCATGTTCCCTGTGTGCCCTGGGCAGGTGTCTCCACCTGGATGAGCCCCAAGATGCTCATCTGTGAAAATGGAGATAATTCCACCCACTCTGTGTGGTTGTTATAAGGTCCAATTACAGGACACGTAGGACGACTGGGAACGGTGCCCAGTGCGCTACAATAACTTGCTCCATTTTAACTGATGTCATGATTGTGGTTTGTTGCTGGTTTTGGTTTTGGTTTTGTTTTTGCCACACTGCATGGCTTGCGGGATCTTACTTCTGTGACCATGGATTGAACCCAAGCCCACAGCAGTGAAAGTGCTGAGTCCTAACCACTGGACCTCCAAGGAATTCCCATGGTTGTGTTCGTGTTCAGGAAATGCCTTTTTTTAAGGGAATGGTTAGAGTTGTTCAGATATTGACCAGGCAGTACCTGGGCCCATGGACTTCCCAGGTTGCTCAGTGGTAAAGAATCCACCTGTCAATGCAGGAGACGTGGGTTTGGTCTCTGGGTCCCCTGGGTCAGGAAGGTCCCCTGGGGCAGTAAATGACAACCCACTCCAGTATGAGAGTCACATGGACAGAGGAGCCTGACTGGCTACAGTCTGTGGGGTCACAAAGAGTCAGACACAAGTGAGCAACTTAGCATGCACCTGGCCGTAAACTTGCTCCTAAGACTTGTTTTCCAGAGAAACCCCAAAGAGTCCTCAGATGCAGTCAGAAGCACCTCGAATTCCTAATGAAAACCTCCATGCCCAGACACGTTCTTACTTTCAAAAAGAGTTTGTGTCTTCAGTGAAAACCCTGCCTTCTGAATAAAGACATTGCCTCTGCGGAGAGTGTGACCAGTCAAGAGGCCCTAAGGGGTCATGGCAAGAAAAGGAAGTTTCTGGTTCCTTTTGCCCAGCTCTGAGGTTATGGATGTTGTGGGGTGGGGTGAGGCAAAGGGCACGGTCTGTATTTGGTAGGAACCCTTGAAAAGGGCCCTAGCCCTGTTTCTGGGTAGAAGCAAGGGAGTAGGCCTGTCCTCAGCTCCCTGAGAACCTGGGGCCCTGAGCAAGCCTTCTAAGGGCCTGGCCTCATGGTTAGGCCCAAGGGCAGTTAGCATTTAATGCCCCTCCTTTGCCCCCATCTCAAACCCTGGGATCTGCCCCTCACCCCACCCCATATTCTTTCCTGGTGCTTCTTTGCAGCTGTGGACTAAGAACTCCCTACCCCACATAGTGAATGGGCAGAAGAGTCCAGGAAAGAACACAGGCTTTGGACTCAGTCAGCCATCTGGATGGCTGGGTAACCTTGGTCAAATGACCTTAACCTTTCTGACCCTTCATCTGCTAGACTGGAAAATTCAGTTACACTGACTGTCAGAGTCCCTGGGAGGATTCACTGGAATGACAGAGAGGCATCAATGTGGTGACTCAGGTCAAAATGGAACAGAAGTTTGGGGCCAGAGACCCACCCTGACTCCTGGGCCAGCCCAGGTGGTTTGCAACCGCCTCGGGGGGACTGCTGTGTGTGCACCATACAGCTGGCTTCTGGCACTGTTTGGGGGTGTCTCAAAGGGCAGCTGCTCTTCTCGGACTCGTGAATAAAGGGGCAGTGCCGGCTCTGGAGGGAAAGCCCCTGCGGGGCCCCAAAGTGATACTGAAGCCTGGGGACACCCAAGGCCAGTTAACTCTGAATCTCTGGCGTTGGTGCGGAGGCCCGAGTGTGTTTAAGATCTCTCAGCTGGTGCTCCGGGCAGCCACCCTTGAGAACCTTTGCCCCACTCGCCTTTTACCTACTGCCTTTGACGTTGTGTTTTGCTCTTGCAG
Seq C2 exon
GCTGCCGAGCACGTTAGGAATCTGATTAAGGCACTGGAAACAAGAGAGCCCGAAAATCCAAGCCTCCATCTTAAAAAAATTCTTGTGGTGAGCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]