RnoINT0157564 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128631597-128633929:+
Coord C1 exon
chr8:128631597-128631681
Coord A exon
chr8:128631682-128633830
Coord C2 exon
chr8:128633831-128633929
Length
2149 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTGCCTGTTGTCCCCCGCAGGCT
3' ss Score
11.9
Exon sequences
Seq C1 exon
AATCCTTGAAAAAGACGAGAACAATATCGATGCCTGGCAAATCCTAGCGGTGCATGAGCTCGTGAAAGAAGGAAACACAGACAGA
Seq A exon
GTAAGTCGCCTCAAGACTCAGCAGCTCAGCCAGGGAGGCAGAGGCGGGGTGGTCAGATGTGAGTTCAGGTCAAGATCCTGTCTGCCCAACAAAGAGAGAGACAGAGATAGAGAGACAGAGGGAGGAGAAAATGACTGGGTTGAGCAATGAACATGTATGATACAAAGAGGAACCCTGCACCCCAGACCCACCTCCACCCCCACCCCTACCCCAGCCCAGTCCGGGCTTTTGAGTAATGGGAAGTCCACCATCCTTTGATGAGCCCAGCGATGCGTTGCGGAATCTAAGGGGGTCACAGCAGGAGGAAGAGGGAAGTGCTCTTTCCATCTACAGAGCTCTGAGATGTGGGCTTCTGAGTTGGAGCAGCATAGGGAAACAGCCGGTACCGGGGGAAACCCCTTGGAAAGGGCCCTGGCAACATCTCTGGGGGGAAATAAGAAGACAGGTCTGTTTCCACTCCTCAATAGGCCTTCTCCAGACCAGAAAGGCAGGGTCAGCATCCCGTGCCCTGTCTCTATCTCCTCAAGCTGTGGGAACTCCCAAGAGCTCTAATTCTGTCTCACTGTGGAGAGCAGACCCAGCTGCCCCACCCCCTTCCCTTTCTCTCCCTTTCTTTTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGAGAGAGGGAGGAGGGGAGAGGAAGGGAGAGAAGAGATGAGAGAGTACAAATGTGTAGAGGTCAAAGAACAACCTGCAGGACGCTCAACCTTCTCTTCCACCATGTGGGTCCCGTCCCAAGGATAGAACTCAAGATGTCAGGCTTACCCACTGGGCCCTCTCACTGGCCCCTGGGCTTCTCTTTTGACAAAGCTTTGCAACTGAGAACTCCAGCTTTGCTGCCCCCAGCCCGGGTGTGAGCAGCAGAGTCAAGGGCATGACTGAATTTTCAGAATCGGTTGTCTACTCAGCCAGGAGTCTGGATGGCAGCCTTCACTCACAGGATTGTAGGAGGTCCCCTAGAGTGGCAGGTGCCCGTGGGTGGGGAGCACATGTCAGATCAGAGCTGAGGACTTGGCTGCCACAGGCTGAAGGCAGGGGCTTAAGGGTGACGCTGTGATCCAAATGAGGCTTCCTCTAGCAATGGCCGCTGCCTGGATGGGTCTTGGCAGGGCAGCTTCCTCACACGCTAAGGGCAAGGGAAAGCATCCTCCCTGGGGAAAACAATGGTCCTCTGAGCTCCACCCGTGGGGGGTTTTGTTTTTATTGGTTTTATATGAGCACACTGTCGTTATCTTCAGACCCACCAGAAGGGGGCATCAGATCCCATAACAGATGGTTGTGAGCCATCACGTGGTTGCTGGGAATTGAACTCAGGACCCCTGGAAGAGGGGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCTACCCGTGGGGTTTTGAAACAGTTCTGATGCCTGGGCCATAGATAAGGAGCAAAGCTGAGGGGAGCGTCAGAGCAAAGAGAGGAGAGGGTAAAACCCACAGCCAGGATTAAAAAGCCCCACCCAACACCTTTCTGTGTTTTGGGGTTCGTTCCAGCAGGGCCTGGAACTTCCTGCTAGTGAGGATGACCTTGATCTCCCCCCTCCCAACCCCCCTCCTGCACTACCTGAGTGCGGGCCGGGATTATAGGCATGCACCGCCAAACTTGGTTTTATTCTGTGGAGCTCTGTGGCGGGGAACCAGCCAGAGCTTCCCCCTCTTTCCCGCTCGGCCCCTCCGGCTAAATCCAGACCGCGGGCCCCACTCTGTTCTCAGCTCTTCCGAGGCATCCCAGCGGTTCTTGGATGCCCAAGAGCCTGAGAACCCGACGGCCACGGCCTCCTTGCAGGCCCGGGGACCCCTGAGCCAGCTGAGGCTGTGTCCCGTGCCACAGACTGCTTCCCACTCCCAGAGCGGTGTCCCGCGGCTTCCCATAGCCCGACACCCACCTGGCGGCGGCGTGGGATAAGCATGGTCCAACTTCGCGGATCCTGCCTCCCAGAGCGAGCCCTGTGGCAGAGTGGATGCCGGACCCGTATAAACCATCCAGGACTTCAAAGATGCTAAGCAAGCACTCCTCCACCAACTAAGCTGTGCTCCCAACATTGCCTGTTGTCCCCCGCAG
Seq C2 exon
GCTGCCGACCGTGTCAGAAACCTAATCAAGGCGCTAGAGACTGGAGAGCCCCAAAATCCAAACCTACATCTTAAGAAGATCCTTGCAGTCAGCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]