MmuINT0167046 @ mm9
Intron Retention
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119854063-119854699:+
Coord C1 exon
chr9:119854063-119854147
Coord A exon
chr9:119854148-119854600
Coord C2 exon
chr9:119854601-119854699
Length
453 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
ATTGCCTGTTGTCCCCGCAGGCT
3' ss Score
12.3
Exon sequences
Seq C1 exon
AATCCTTGAAAAAGACGAAAACAATATTGATGCCTGGCAAATTCTAGCTGTGCACGAGCTGGTGAAAGAAGGGAACACGGACAGA
Seq A exon
GTAAGTTGCCTCAAGACTCAGAAGCTCAGCCTGGGGACACATCTGTAATCCCAGGAGTCGGGCAGGATGATCAGAGATGAGTTCAGGTCAAAACCCTGTCCGTCCAAAAAAGACAGACAGACAGAGAGCAGGAGTCTGACTCAGCTGAGCAATGAACAGATACAATACGAGGAGGAACCCACTGCACCCCAACCCCAGCCCCAACCCCAGCCCCAGCCCACACCCAAACCCAGCCCTGGCTTTTGAATAGTGGGACATACACCATCCTTTGACAAGGCCAGCAATGCAGAGAAAGGAAGTTCTCCCATCTGTAGAGCTCTGAGATGTGTCCCAGGGGAAAACCCTTGAAAAGGACCCTGACATCATCCCTTGGAGAAACAAGAACTCATGCGTGCTAAGGCAAGCACTCTGCCAGCCAAGCTGTGCCCCCAACATTGCCTGTTGTCCCCGCAG
Seq C2 exon
GCTGCCGACCGGGTCAGAAACCTCATCAAGGCGCTAGAGACTGGAGAGCCCCACAATCCAAACCTACATCTTAAGAAGATCCTTGTAATCAGCAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514-Ttc21a:NM_028735:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: