HsaINT0174169 @ hg19
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:30761]
Coordinates
chr3:39159560-39161511:+
Coord C1 exon
chr3:39159560-39159668
Coord A exon
chr3:39159669-39161412
Coord C2 exon
chr3:39161413-39161511
Length
1744 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATC
5' ss Score
4.41
3' ss Seq
TCTCTGTTTTGTCCCTGCAGGCT
3' ss Score
12.75
Exon sequences
Seq C1 exon
AATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGCCAAATTCTAACCGTGCATGAGCTTGCAAGAGAAGGAAACATGACCACAGTAAGTTCTTTGAAGACTCAGAAG
Seq A exon
GTGATCCTTGAAACAGAATCAAGGAGGAACCCTTCATGACCTGTGCACCTGACCCAAAGCCCTTGTAGGGAGCTCCTGGATCTCAGCTTCCTCTTTTCTACCCCACCCCTATACTCGCTGCCAAGGAGGCCTGCTCTGGTTTGACTCTTTGAGTTGTGTAGCTTGGGAGTCAGGCAGCATCAGGCAGTGAGATTGATTCTAGGCTCTGCCATGTGCTATCTGTGGAAGCCTGGGCAGGTGTCCCCACCTGGATAAGCCGCAGGCTTCCTGTTTGTAAAATAGACAGAATTCCACACAGGACTAAATGTGATAAGAAGTGGGAGAGTTTGGAACAGTCCCTGGCACACTACAGTAATTCCATCAATGTTAACTGATAGTAGAAGTCGTGGTAGTATTTCTGAATTCAGGAAATGCCTTTTTTTTAGGGGATAGTTGGAACTGCTCAGGCATTGGCCAGGTAATACTGGGCCCCAAACATGCTCGTAAGTCTTGTAGTTTTCCAAAGAAACCAAAAATAGCCCTCAAATGCAGTCAGAAACACCTAGAATTCTTAGTGAAACCTCAATACCCAGACAGGTTCTCATTTTCAGAAAGGTTTGTTTTTAGCCAAAGCATTGCCTTTTAGATCAGTGAAATATATTGCCTCTATGGAGAGCATGGCAAACCAGGAGTCTCTAAGGGGTCATGGTGGGAAGGGGAAGCTTCTGGTTTCTTCTGCACAGCTCTGAGATTGTGGATTTTGTGGGATGGGGTGAGGTAGAGGGGAGAGTCCGTATTTGGGAGAAAAAGGCCCCAGCCCTTTTCGTCTCTGGGTAGGAATAAGAGAATAGGACTATCCTCAGCTCCCTGTGACTCCAGATCCCTAAGCAGGCCTTCCTGGGGCCTGGCCTGAAAGTTAATCCCAGGGGCAGACTTAGCATTTAGCTAACTGAGATTTAGCATTAGCCCCTTTTTTACTCCCACTTCAAACCTTGGGACCTCCCCACCGACCCCGGGCTGGCTACCCAGTTCTAATTTTGTTCATACTTACTGAACAGAGTGGACCCATACCATCCTTGGTTTTGCTTTTGGCACTTCTCTGCAGCTGGGAACTAAGAATTCCTTACTCCTGGGTGGGGAGTGGGAAAGAACCTAAGCTTTGGAATCTGTCAGTGACCTAGGTGGCTGGGTGACCTCAGACCAATTGCCTAACCTTTCTAACCTTTCATGTGTTGGACAGGAAGGTTTGGAAAGTTCGAATAGTTATACTGACTTACATTTGATTCATGTCAAAATGGAGCAGAGGCTTCTGGGCCAGCACTAGTTAGTTTGCTGCTGGCCTGGCAGGCTGCACTGTGGACACAGTGAGGGCTAGCTCCTGGCTCTGCCTGGGTGGGTCTGAAAAGGCAACTTCTCTTCACAAACTCAGGAACAGGGCTACTCTATGGGTTAGCCCTGCTCCATAAGGAGCAGTCAAAAAAAAAAAAGAAAAAAAAGAAAAAAAAAAAACAAATTCAAGAACAGAGGGGCAGTGCCAGCTCTGGGTGAATAATGTCCCCAGGAGTTCCACTTATAGGCCTTTGAAGTAATTCTGATGCCTGGACCACTCCAATTCACTTAAATCTGAATTTCTGGGGGGTTGTGCCTGGGCATGGGCATTTTTTAAATCTCCCAGCTGATGCTACTATGCAGTCAGGGTTGAGAACCACGGCGCAACTCTGACCTTGCACCTTGCATGTTGACATTCTCTGTTTTGTCCCTGCAG
Seq C2 exon
GCTACCAATCACGTTAGAAATCTGATTAAGGCACTAGAGACAAGGGAACCCGAAAATCCAAGCCTCCATCTTAAAAAAATTATTGTGGTTAGCCGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026-TTC21A:NM_145755:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGAGAGCAATATTGATGCCTG
R:
CAGTCGGCTAACCACAATAATTT
Band lengths:
198-1942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)