BtaINT0154302 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12496783-12498180:+
Coord C1 exon
chr22:12496783-12496881
Coord A exon
chr22:12496882-12497987
Coord C2 exon
chr22:12497988-12498180
Length
1106 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CCCGTGTCTGTTCCTTTCAGTGT
3' ss Score
10.86
Exon sequences
Seq C1 exon
GCTGCCGAGCACGTTAGGAATCTGATTAAGGCACTGGAAACAAGAGAGCCCGAAAATCCAAGCCTCCATCTTAAAAAAATTCTTGTGGTGAGCAGACTG
Seq A exon
GTAAGAAAGCTCCTCCCTGGTTTCTGAACTAGCGCATCCTGTCTTGTTCCCAGGGGAGATCTGTGGTCCCCTAGAAGCTCCCTCAGGACCCTGCCCCACCCCTCTGGCTTAAACTTGATCTCTCAGTCTAGTGGCCCAGGCCCTGGGGCCCCTGCCTGCCTCCATCCTATCACAGTATCCGGTGGCTTCTCTCTCCTGTGCCCACGTGCCCTTCAGAGATGCTGTGAAGACCATGGAAGTGAGATCTGGAAGTGCTTTCAGAGTGGGAGGCGCCCTATTTGGGGAAAGAGGGCAGCAACACAGCTGTGGAAGAGCAGGGTGCTGGAGCCCCCGACTCCTGTGTTCTTTTTGTGAAAGAGACCCAGGGAGGCCGCCTGCCTAACTGTCTCTGACGCCAGGCACGGTGCAAACAGCTGCCAAACGGCCTGTCTCTGTCGCAGCCTTCAGCCCCAGAGCAAGACTTACTAGAAGGGGGGCTTCCCAGGTGCTCCTGTGGCTAAGACTCCACTCTCCCAGTGCAGGAGGCCTGGGTTCCATCCCTGGTCAGGGAACTATATCCCACATGCTGCAACTAAGAGTTCACAAGCCTCAGCTGGAGATCCCGTGTGCCCCAACTGAAAAGAAGAAAGATTTACCATAAGGAATTGTCATGAGAGCAGGGGCAACTCTGGGGAGTCTAATTCCACTGGGATATGCTCTCTCCCTCCACCTCTGTGTCTGATTCTCTCTGCTCATTCTCCACACACAGCAGGGAATGTGGCTGCTCACAGCCCTCAGGGCCACTTCCCATCAGTGCGACACCAAGAGTTCCCCTCGTGCAGTTTCAGTTTATGAAAAACCTCCTGGCAACTTGTTGGACCGGTGACTATGGCCAGACACGGGGCTGGGTCCCTCCGAGGGCTCCATGCCTGGAGGCGGTTCCGCACATGTGGCCACCGGGGTCGGGGGGATTCCTTGCGAGCTGGACAGCTACCTGGACACACGGTACTTTTGGGGCTCTCCTGAGCACCCCCGAGTCCTGCCAAAGTGTCCCCCATTTGCAACATGGCCTTGTTGAGGCAGGTTGGAGTGACTGGTATCCGCTTCCCCGTGTCTGTTCCTTTCAG
Seq C2 exon
TGTGGGAGGCACCAGGGGATTCTGCAGCTGGTGTGTAGCTTCATCGAACGAACCTTCATGGCCACATCCTCCGACGCCCACATGGCCACTGAGCTGGGCTACCTCTTCATCCTGCAGGACCAAGTAAAGGAGGCGTCTCTTTGGTACTCGAAGGCCATGAAGCTGGACGAGAGCAGCGTGGCTGCCTTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(63.1=63.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGCACGTTAGGAATCTG
R:
CTGTCAAGGCAGCCACGC
Band lengths:
289-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]