RnoINT0157565 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128633831-128634850:+
Coord C1 exon
chr8:128633831-128633929
Coord A exon
chr8:128633930-128634657
Coord C2 exon
chr8:128634658-128634850
Length
728 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CATATGTCCACTCTTGGCAGTGT
3' ss Score
5.75
Exon sequences
Seq C1 exon
GCTGCCGACCGTGTCAGAAACCTAATCAAGGCGCTAGAGACTGGAGAGCCCCAAAATCCAAACCTACATCTTAAGAAGATCCTTGCAGTCAGCAGGCTG
Seq A exon
GTAAGTAGGTGGCATCCTGTTTCTGACCTACCCCTCAGTTCCAAGAGATGACCTTGAATTCCCCCCTTTATGCTCCGAGCACCCTTCCCCTTCCAGCTCGAGCCTGGACCTTCCGCTTAGGTAGCACATCCCTATGGCCACTGCCCTTCTCTGGCTGTAAACAGTGACATGATGTGGCCACTAGGAGGCGCCATAGTGACTAAGGAGTTGGGGTCTGAAGGGATAACTGTGGTGGCCCTACTAGGGAGGGAAGGTACCACTATAGATATACACGGAGGATGACAGTCACCCAGTAGCACCTAGCTACCCCTGTCTGGTTCCTGCAGCCCAGGGTTGGCCTGATTCTTAGTTTTCACTGTAAACCTTGCTTGGGAGTGAAGATTTTACAAACGGCAAACTCTGGCAACTTGGTCAGTTTGGACCTTTGATGTCAGAGACCCAAGTGGACTGTCGGTTAAGACCAGTTACTGTGGCCAGCCGAGGGCATGTCCAGAAGACCCCGTGGCACCGGAGTTTCCTCAGGAAATGGATAACTAGCTGGACACACCCAGTTTCCTAGATAGAGATCCCAGATACCTCTTGGGCTCTTTGGGACCTCCCAAAATGTGCTGAAATTCGCGAGTGCGTAGACCCCCCCCACACACACACACACACACAGGTCTGACATGCTTTCACCCAGACAGGCTGAGCTGACAGACTCTCTGTTCCCATATGTCCACTCTTGGCAG
Seq C2 exon
TGTGGGAGGCACCAGGTGGTCCATCGGCTTGTGAGCGGCTTCCTGGAGCGCACCTTCATGGCCACACCTTCCTGTGCCCTTGTGGCCACAGAGCTGGGCTACCTCTTCATCCTACAGCAACAAGTGAAGGAAGCCTCTCTGTGGTACAAGGAGGCCATGAAGCTGGAGGAGAACAGGCTGGCTGCCTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGACCGTGTCAGAAAC
R:
CAGCCTGTTCTCCTCCAGCTT
Band lengths:
278-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]