BtaINT0154767 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012827 | TTLL11
Description
TTLL11 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A7E2Z5]
Coordinates
chr11:92851289-92852246:-
Coord C1 exon
chr11:92852151-92852246
Coord A exon
chr11:92851405-92852150
Coord C2 exon
chr11:92851289-92851404
Length
746 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGGAATCCTTACCCTTCAAGCTC
3' ss Score
4.78
Exon sequences
Seq C1 exon
ATTTTAGGCTTTGACATTCTTCTCATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGCATGAGAATCGAACACGAGCAAGAA
Seq A exon
GTAAGTATTTTGAGTATCTCATTGAATATAGTACCAGGCAAACTGAATGGTCCCACTCTTCTCGCTGCTCCCTTGGCTAAACAAGATTCGACATTGCCAGATTTGCCCGGCCAAGTTCTGTTCCTGCCTAAATAACTTCAGTTTTGTTGAGCTCAGAACATCGTCTATTAATATAAGACCTATCTGACCTATGGTGACTTCCCCGCGTGCCCTTCTCCAGTTCTGAAGATCTGCAAATGGAGAAGCAGCTGAGCCTTTCCATCAGTTTTGACATGAACTAATTAGTTAGCCTCAGGAGATGAACTAATTGAAATTCTATGAATATGATTTAGCCATGTCGACATGCTTGAGTCCCTAAGATAAATAGTACATTGAGCAGTGCTTATCTCCCCCCACCTGCCCCTCCACCCCTCTCTTAAGAATACATTAAAAAAGACTGGAAGGAAATACACCGACTATTAATCCTGGGTTTTGGGTGGGGGTGGATTATGAAGGTTCTTTTCTTCACCTCTTCCATATATTCAAATATTCTACAATGAGCATATATCATTTTGATAATGAGAAAAACCCAGTGCTATTCTTCCCCCTTCGTGTATTTTGATTTGTAAAAGGAAACTGACATTTTAAAGGTAGACTGAAGGGAGCCTTTAAACAATTCTGACAGTACAACCACTGGGGCTGGTGCTTGTGGTCAGTTGGTGCCGAATCACTGTCTCTACCATAACATGGAATCCTTACCCTTCAAG
Seq C2 exon
CTCTCTCCAGGGGTATTTGAGAATGTCCCCAGTCTTGTCGATGAAGAAGTGAAAGTGGCCGTGATCAGAGACACACTGCGTCTCATGGACCCACTTAAAAAGAAAAGAGAGAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012827:ENSBTAT00000017043:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(12.4=100)
A:
NA
C2:
PF0313310=TTL=PD(10.4=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTTGACATTCTTCTCATGA
R:
GGCTCTCTCTTTTCTTTTTAAGTGGG
Band lengths:
206-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development