RnoINT0005629 @ rn6
Intron Retention
Gene
ENSRNOG00000019339 | AABR07051518.1
Description
tubulin tyrosine ligase like11 [Source:NCBI gene;Acc:689746]
Coordinates
chr3:15225636-15226781:-
Coord C1 exon
chr3:15226686-15226781
Coord A exon
chr3:15225752-15226685
Coord C2 exon
chr3:15225636-15225751
Length
934 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CAGAGTTCTTACCTTCCAAGCTT
3' ss Score
2.18
Exon sequences
Seq C1 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACCTGAAGCCCATGCTACTTGAAGTGAATGCAAACCCCAGCATGAGGATTGAGCATGAGTACGAA
Seq A exon
GTAAGTGATGCAGCGCCCCTGGGTCTGAGGCTGCAGAGCGCCCCCTAGGCTTTGAGGCTGCAGAGCGCCCCCTGGGCCTTGAGGCTGCAGCGGGCAAACCCCTGCAAACTCCTTTACTGCCCAAGACTTGCCACCCTTGAAATTTCACAGCAAAGTTTCGTTTGAGTCAAATACTTTTAGTTCTGTCGAGCTCCAAACAGAGTCTATTAATATGAGACCTTTCCGACCCTTGGTAATTTCCCAGCATGCCATTCTCCTCATTTTTAAGGTGGGAAACTTGGAAGCATCGAGTCTTTCCATCAGTTTTTTTTTTTTCCATCAGTTTTGACATGAACTAATTAGTTAGCCTCCGGAGATGAACTAATTGAAATTCTATGACTATGAGTTAGCCATGTCGATGTTCTTGAGCCACTAAGATAAACAGTACATTTAACAGTGCCTATGCTGCCCCTCACAACACATTTAAAAAGCTGGAGGAAATACCCCTAAAATTACTAGTGGGCTTTGGGGGGATTATCTGGATTCTTTTAATTTTCTTTCAACCCTCTTCACATTCTCAGCTCTTAGAAAAATAATCCAAGAAGCACAGTGCTAAGACCAGGCATGTGGTGCACATCTGTAGTCCCAGAAGTCCAGAGGGCAGAGTCATGAGTTCAAGACCATTCTCAGCTACATATCAAGTCAGTGGCTAGCCTTGGCTAACAAAATAAAACCATACCACCACCAACAAAACCATAGTGCTAGCGTTCCTCTTTGTAAGTTTTGTGATTTTATAAAAGGGAATTTGCTTGCTAATATGGAGGGAAGGTCTAAAAATTGTTTTCTATGGATTCGTATAGGCCAGATGTATAATTGCACAACCATTTGAGCTCGTCAGAGGCAGTCAGGGACTGGGTCACAGTTTGGCTCTAACTCAGAGTTCTTACCTTCCAAG
Seq C2 exon
CTTTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGACGAAGAAGTGAAGGTGGCCGTGATCAGAGACACGCTGCGCCTCATGGACCCGATGAAGAAGAAAAGGGAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019339:ENSRNOT00000032204:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.5=100)
A:
NA
C2:
PF0313310=TTL=PD(10.0=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGGCTTTGACATTCTTCTGA
R:
TCTCCCTTTTCTTCTTCATCGGG
Band lengths:
206-1140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]