GgaINT0126318 @ galGal3
Intron Retention
Gene
ENSGALG00000001389 | TTLL11
Description
NA
Coordinates
chr17:9352546-9353262:-
Coord C1 exon
chr17:9353167-9353262
Coord A exon
chr17:9352665-9353166
Coord C2 exon
chr17:9352546-9352664
Length
502 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CATCCCTTTCTGAATTAAAGCTC
3' ss Score
5.78
Exon sequences
Seq C1 exon
ATTTTAGGGTTTGACATTCTCCTGATGAAAAACTTGAAGCCCATGTTGCTGGAAGTAAATGCAAACCCCAGCATGAGAATAGAGCACGAGCAAGAG
Seq A exon
GTAAGACCTCTCAACATGACAGTGATATGGGAATGAAATTGTCTAGGATTGGTTTTCGGGTCTTTCTCCTTGTTTGAGATATGAAGGCTGTCTGCTAATATGAAAACTCTGAGGCTCTCTGTAATTTTCTGCTTTGAAATCATTACTAATCTTATACCCTTGAAATATGACTTATTGGAATTGTGAAAGCTCTCCATTGTCTTTGTCGTAAATACATTTATTCATCATCCCCTGCAGTTTTCTTAACTGTATTTAGAGGATTGCTACTTTTTTTTTCACATTTGTATGTATAATGTAAATGGTAATATTGGCAACAATCTCTCTTTAAATTTTGGGTTACTAGAGAAATTTGCTAAAATTGTTGTAACATCATACTGAAAATACTAAGGTATTTGCTGATTCTTTAAGAATTGTTTCATGTGTTACACGTAGGGTTGAGAAGATGTAGAGTCAATAATCCTCACTTCTACACTGAATAATTCCATCCCTTTCTGAATTAAAG
Seq C2 exon
CTCTCTCCTGGGGTGTTTGAAAATGTCCCAAGTCCTGTTGATGAAGAAGTGAAAGTAGCTGTTATCAGAGATACTCTTCGTCTAGTGGACCCTCAGAAAAAGAAGAGAAAAGATATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001389:ENSGALT00000002114:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(20.3=100)
A:
NA
C2:
PF0313310=TTL=PD(23.5=90.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAGGGTTTGACATTCTCCTGA
R:
TTTTCTCTTCTTTTTCTGAGGGTCCA
Band lengths:
206-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]