HsaINT0174679 @ hg19
Intron Retention
Gene
ENSG00000175764 | TTLL11
Description
tubulin tyrosine ligase-like family, member 11 [Source:HGNC Symbol;Acc:18113]
Coordinates
chr9:124736288-124737258:-
Coord C1 exon
chr9:124737163-124737258
Coord A exon
chr9:124736404-124737162
Coord C2 exon
chr9:124736288-124736403
Length
759 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
AGAATCCTTACCCGTTCAAGCTT
3' ss Score
0.82
Exon sequences
Seq C1 exon
ATTTTAGGCTTTGACATTCTTCTAATGAAAAATCTGAAGCCTATACTACTTGAAGTAAATGCAAATCCCAGTATGAGAATCGAACATGAGCACGAA
Seq A exon
GTAAGTATTTTGAGCATCTCATTGACTATGTTGCCATACAGCTGAATATTCCTACCCTCATGTTGCTCACTTAACAAAACAAGATTGGACATTCTCAGATTTTCATAGCCAAATTCTGTTCAAGTCAAATAATTTCAGTTTTGTTGAGTTCTCAACATAGACTATTAATACAAAGCCTATCTGACCTGTGGTCACTTCCCAGCATGCTGTTTTTCCAGTGTTGAAGGTTTGGAAACTTAGAAGCAGCTGAGCCTTCCCATCAGTTTTGACATGAACTAATTAGCCTCAGGAGATGAACTAATTGAAATTCTATGAGTATGATTTAGTCATGTTGACATACTTGAATCACTAAGATAAATAATACATTTAGCAGTGGTTATATTTTTCTCCCCCTCCCCCAAAAAATGCATTTAAAAAAACTGGAAGGAAATACAGCAGATATCAATATTGGGTTTAGAGAGGATTATATGGATTATTTTAGTTTTCTTAACCCCTTTCTATATTTCTTAATTTTTTGCAGTGAGCATGTATCATTTTGATAATTAGAAAAACATAGTGCTATTTTTCCTCTTCATGTATTTGGTTAATTTATAAAAGGAAATCGACATTCTTAAGGTAGTATAAAGGAAGTCTTTAAAAATTTTCTTCTATAGATTAGCATAAGCAAAATTTACTAGTATAACCCCTGGAGCTAGCTGGATAGCCACTTGGCACGGAATCACGGTCTCCACTGTGACACAGAATCCTTACCCGTTCAAG
Seq C2 exon
CTTTCTCCAGGGGTGTTTGAAAATGTCCCCAGCCTCGTTGATGAAGAAGTGAAAGTGGCTGTGATCAGAGACACTCTGCGCCTCATGGACCCACTTAAGAAGAAAAGAGAGAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175764-TTLL11:NM_001139442:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.1=100)
A:
NA
C2:
PF0313310=TTL=PD(7.5=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTAGGCTTTGACATTCTTCTAATGA
R:
TCTCTCTTTTCTTCTTAAGTGGGTCC
Band lengths:
206-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)