DreINT0169407 @ danRer10
Intron Retention
Gene
ENSDARG00000060374 | ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:ZFIN;Acc:ZDB-GENE-061013-747]
Coordinates
chr5:33038504-33040455:+
Coord C1 exon
chr5:33038504-33038599
Coord A exon
chr5:33038600-33040342
Coord C2 exon
chr5:33040343-33040455
Length
1743 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ATTGACTTCACATGTTTCAGGTC
3' ss Score
7.16
Exon sequences
Seq C1 exon
ATCCTGGGCTTTGATATCCTGCTGATGAAGAACTTGAAGCCTGTTTTATTAGAAGTCAATGCCAATCCCAGCATGAGGATTGAACACGAGCAGGAG
Seq A exon
GTGAGGTGCAGATGTTATTTTTAAGTGTTGTGATTTAAATAAACTGCTGTCGTAAAGTACCTTTGGTAGTTTTAATTACATTTTATGTAATTTATTGTGTCAAACTATATTAGTTTGGTTACTTAAAATAAAAAATGCCATGGGACTGTACATGTCATAAATATAAAAATAACATGGTATTTTTTTTAAACAGTTGTTCCATGACTAAAATAGAAAAAAATTACATAAAAGAAATATAAAAGTGGAACTATCATATAACACTTGCATTTAAAAATTATTATGTCAAAGAACAGTTCATAATTTAATTGTAAGTCAAAATAATTACTCAGTCTGTTTAATTAATGCATTGAATAACAGGGCTATATGTTCGAAGTCAAATACTTATTCAGGAAGGCACAAAATAATTTTATTAATCTTTTTATTAGACCTTCTATTCACTAGATAATGCATCAATGTTTACATAAAAAATAATCAATGTTTTCTACACTGATAATAATAATGTGTTTCTTTAGAATTGTTTCACATTGATGATAATTTCTAAAGGATCTTGAGACACTGAAGACTGAAGCAATGAATGTAGAAAATCGAGCTTTGTAATACCAGAACAAAAGACATTTCAATTAATAGTAAAATAGAGAGCAGCAATTTTATGCCGTGTATATAGATATCCAGTGCTTCGCATAATTGAGTACACCCCATTTTGGAAATGATTATTTGTATCCATTTCTCAGTAAATATAGGCAATGTATTTTGGTGCATTAAAACAAAACAGATTTATTAAACAGATATATTTATTAAAATGAAATTTTAGTCACCAAATATATTCAGAAATTGAAAGATAACACAATTGAATTTAATCTAAATATTTTTAAAAAAAAGTACAACCTACAAAATTTCAACAAAATTTTTCACATTTTTTGCTTCTTTTGATTTTTCCTCCTTTTAAAATTTGTATTTAATATTTTTCTATAGCATATACATGTGGGCGCACTAGTTTTTGGACTTTTATTGTAAGTTATTTTGTTAGATAAGCTCCAAATTTGGCTTCAGTACTGACAAATTTAAAATATATGCAAAAAAAATAATATTGTATAGCTTACTATAAAAAATAGGAATTTAAAAGAGATTTGTGAGGGTGTACTTACAGTTGAAGTCAGAATTATTATTCCCCCTTTTATTTTTTTCCTCTTTTTAAATTTTTCCTAAATGAAGTTTAACAGAGCATGGAAATGTTCACAGTATGTCTGATAATATTTGCTCTTCTGGAGAAACTCTTATTTGTTTTATTTTGGCTAAAATAAAAAAAAAAAGTTTTTAATTTTTTAAACACCATTTTAAGGTCAAAATTATTAGCACCTTTAAGCTATATATTTTTTCCGATACTCCACAGAACAAACCATCATTATACAATGACTTGCCAAATTACCCTAACCTGCCTAGTTAAACTACTTAACCTAGTTAAGCCTTTAAATGTCACTTTACGCTGTATAGAAATGTCTGGAAAAATATCTAGTCAAATATCATTTACTGTCATCATGACAAAGATAAAATAAATCAGTTATTAGAAATTAGTTATTAAAACTTTTTTTTTTTGCCTTGCTCAGCATTAGGTGAAAAATAATCACTAACTCCAAACAAACTAAGAAGTTACCTAAGAGAAGATGAAACTTGAGTTTACAGCCTAATAGAAACAGAAGCATCTGTCTGTTAGGATGCTGATATTATTGACTTCACATGTTTCAG
Seq C2 exon
GTCTCACCTGGTGTGTATGAATACATCCCCAGTCCAGTAGATGAGGAGGTGAAAGTAGGAGTGATCAGAGACACACTGCGCCTCATGGATCCTGCTCAGAGGAAACACATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060374:ENSDART00000085684:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.0=100)
A:
NA
C2:
PF0313310=TTL=PD(8.4=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGCTTTGATATCCTGCTG
R:
TGATGTGTTTCCTCTGAGCAGG
Band lengths:
206-1949
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]