MmuINT0167542 @ mm10
Intron Retention
Gene
ENSMUSG00000026885 | Ttll11
Description
tubulin tyrosine ligase-like family, member 11 [Source:MGI Symbol;Acc:MGI:1921660]
Coordinates
chr2:35889265-35890367:-
Coord C1 exon
chr2:35890272-35890367
Coord A exon
chr2:35889381-35890271
Coord C2 exon
chr2:35889265-35889380
Length
891 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
CGGCATCCTTACCTTCCAAGCTC
3' ss Score
4.12
Exon sequences
Seq C1 exon
ATTCTAGGCTTTGACATTCTTCTGATGAAAAACTTGAAGCCTATGCTACTTGAAGTGAATGCAAACCCCAGCATGCGAATTGAGCATGAATACGAA
Seq A exon
GTAAGTGATTGCCGCACACCCCCTGGGCCGCAAGGCTGCAGCGCACATACCCCTGATTGCAGGGTATCCCCTTGGCTGCCCAAGACTTGCCACCCTTGAAATTTCACAGCAAAGTTTGGTTCAAGTCAAATACTTTTAGTTCTGTCAAACTCCAAATAGAGTCTATTAATATGAGACCTTTCCGACCCTTGGTAATTTCCCAGCATGCCATTCTTCTCATTTTTTAAGGTGGGAAACTTAGAAGCAGCTGAGCCTTTCCATCAGTTTTGACATGAACTAATTAGTTAGCCTCAGGAGATGAACTAATTGAAATTCTATGACTATGAGTTAGCCACATCGACATTCTTGAGCCACTAAGATAAACAGTACATTTAACAGTGCCTGTGCTGCCCAACCCTCACCACATATTTAAAGAGCTAGAGGAAATACCCCTAAAATTACTACTGGGTTTGGAGGGATTATCCAGATTCTTTTAATTTTTTTCAGCCCTCTTCACATTCTCAGCTCTTACAAAAATAATCCAAGAAGTACAGTGCCAAGAATAGGCATGTGGTGCACACCTATAGTCCCAGGAGTCCAGAGGGCAGAATCATGAGTTCAAGACCACCCTCAGCTACATATCAAGTCAGTGGCTAGCCTTGGCTAACAAAATAAAACCATACCAATAGCACCAAAACAATAGCACTATTGTTTCTCTGTGTGAGTTTTGTGAATTTATAAAAGGTAATTTGCATGCTAATATGGAGGGGCGGTGTAAAAGTTCTCTTCTATGGATTTGTATAGGCCACACATATAAACTGCACAACCATTTGAACTAGTTGGAGGCAGTCAGGGATAAGCATCAGGACTGGCTCACAGTTCGGCTCTAACTCGGCATCCTTACCTTCCAAG
Seq C2 exon
CTCTCTCCAGGAGTGTTTGAAAATATCCCCAGCCTGGTGGATGAAGAGGTAAAGGTGGCTGTGATCAGAGACACGCTGCGCCTCATGGACCCGCTGAAGAAGAAAAAGGAGATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026885:ENSMUST00000112976:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0313310=TTL=FE(10.1=100)
A:
NA
C2:
PF0313310=TTL=PD(7.5=59.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGGCTTTGACATTCTTCTGA
R:
TCTCCTTTTTCTTCTTCAGCGGG
Band lengths:
206-1097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types