BtaINT0155337 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25952335-25953210:+
Coord C1 exon
chr26:25952335-25952515
Coord A exon
chr26:25952516-25953029
Coord C2 exon
chr26:25953030-25953210
Length
514 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGC
5' ss Score
7.52
3' ss Seq
GGGCTCTCCCCTGCCCACAGGTC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GAAAATACCTGAACGTGGTCAGAGAGTGTGGTCATGACGTCACGTGTCCGGCGGCCAAAGAGGTCATCTACACGCTGAAGGAGCGGGCATACGTGGAGCAAATCGAGAAAGCCTTTGGCTATGCCAGCAAGGTGCTGCTGGGCTTCCTCATGGAGGAGAAGGAGCTCGTAGCTCACCTGAG
Seq A exon
GTGCGCGGCTTCCTCCTGGGGTAGAAGGGGCTCGCGGCCCATCTGAGGTGCGCGGCTTCCTCCTGGGGTAGAAGGGGCTCGAGGCCCATCTGAGGTTCGCGGCTTCCTCCTGGGGAGAAGGGGCTCGCGGCCCATCTGAGGTGCGCGGCTTCCTCCTGGGGTAGAAGGGGCTCGAGGCCCATCTGAGGTGCGTGGCTTCCTCCTGGGTAGAAGGGGCTCATGGCCCACCTGAGGTGCACGAGCTCAGCGGCTCCCTGCCCTCCAGGGGCCCATCTGCAGCCCCCTCTGTGCCCTTCTGGTGGCATCTCCTGCACAGCCTGGTGTAGTAGGCCTATGCCCCCAATTCCTTGGAGCTCATTTTGAGCTTACCTCTGACGCCCGTGTAAGTGTGTTTCTCAGTGGGGGCACTCATAGGCTCTGCGGTCACACGTCCTCCCCGCCCCACCCAGTGCCTTGTGACCTGGCACCCACTGTGGGGAGCACGAGGCAAGCCTGGGCTCTCCCCTGCCCACAG
Seq C2 exon
GTCCATCAAGCGCTACTTCCTCATGGACCAGGGTGACTTCTTCGTGCACTTCATGGACCTCACAGAGGAAGAGCTGAAGAAGCCAGTGGACGACATCACGCCCACCCGCCTGGAGGCGCTGTTGGAGCTGGCCCTGCGCATGAGCACCGCCAACACCGACCCCTTCAAGGACGACCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395:ENSBTAT00000008383:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.6=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGAACGTGGTCAGAGAGT
R:
TCCTTGAAGGGGTCGGTGTT
Band lengths:
346-860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]