RnoINT0158292 @ rn6
Intron Retention
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212341807-212342440:-
Coord C1 exon
chr1:212342260-212342440
Coord A exon
chr1:212341988-212342259
Coord C2 exon
chr1:212341807-212341987
Length
272 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
3' ss Seq
GTTCAACAACCCTGGCACAGGTC
3' ss Score
3.01
Exon sequences
Seq C1 exon
GAAAATACCTAAATGTGGTCAGAGAATGTGGTCATGATGTCACCTGTCCCGTAGCCAAAGAGATCATCTATACCCTCAAAGAGCGGGCATATGTGGAGCAGATTGAGAAAGCGTTCAATTATGCCAGCAAAGTGCTGCTGGACTTCCTCATGGAGGAGAAGGAGCTGGTGGCCCACCTGAG
Seq A exon
GTTGGACTTCACTTTGTATCCAAGGGGCTGAAAGTAGAATGTTCCTCTTAGCAACTACATTTTTATCTCTATAAGGGCTCCCTGCAGCCCCAGTGTGAGGTGGCAGGGTTTCCGTTCTCTAGTTCTCAGACCATGCAAGCCAACAGGTCTCTCAGCTCCTTGCTGTCAGTCCCTCCCCTTCCGTGTCTGAGCAGAGCAGCTCCATGTCTCAAACCTCTTCCTTGTATGTTGAAGGCAGAGGTCAGGTTATATGTTCAACAACCCTGGCACAG
Seq C2 exon
GTCCATCAAGCGCTACTTCCTGATGGACCAGGGGGACTTCTTTGTGCACTTCATGGACCTGACTGAGGAGGAGCTCAGGAAGCCAGTAGAGGACATTACGCCCACACGCCTGGAGGCTCTGTTGGAGCTGGCCCTGAGAATGAGCACTGCCAACACTGACCCCTTCAAAGACGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137:ENSRNOT00000024573:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.6=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATACCCTCAAAGAGCGGGCA
R:
TGAGGTCGTCTTTGAAGGGGT
Band lengths:
292-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]