HsaINT0175386 @ hg38
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133288129-133289020:-
Coord C1 exon
chr10:133288840-133289020
Coord A exon
chr10:133288310-133288839
Coord C2 exon
chr10:133288129-133288309
Length
530 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
ACGCCTGCTCCCTGGCGCAGGTC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GAAAATATCTAAATGTGGTCAGAGAGTGTGGCCATGACGTCACCTGCCCGGTGGCTAAAGAGATCATCTACACGTTAAAAGAGCGGGCGTATGTGGAGCAGATCGAGAAGGCGTTTAACTACGCCAGCAAGGTGCTGCTGGACTTCCTGATGGAGGAGAAGGAGCTGGTGGCTCACCTCAG
Seq A exon
GTGATTCCGTGCCCTGTCCCTGTGCGGGCACTCACCTCCCTCTGAAACCGGAACCTGTGGGACGTGGGGCTGAGATCGCTGGGTTTCTTCTGGCAGCTCCGCCTTGTCTTTTTGAAAGTGGGCACTGCTGGATGGTCTCTAGCTCAAGGACCTGGCACTCACAGTGGGTGGTGTAGGCCCCCGGTCACCTTGTCCAGGGGCCCCAGCTCCCCTCCTTGCCCAGGGCCCACCAGCCCCTTCTCAGCTCCTCCTGCCACAGCTTGCGTGGTGGTTGCACAGCCCCTGCCTGAGAGCCAAGCGCTTAGCCTGTTGTAGTGTGTTTTAGGGTGATGGCTATGGCGAGCATCTGTGGGTGGGCACGTGCTCACGCCTGCTCCCTGGCCGTGGCGGGCACCTGCGGGTGGGCACGTGCTCACGCCTGCTCCCTGGCTGTGGCGGGCACCTGCGGGTGGGCACGTGCTCACGCCTGCTCCCTGGCTGTGGCGGGCACCTGCGGGTGGGCACCTGCTCACGCCTGCTCCCTGGCGCAG
Seq C2 exon
GTCCATCAAGCGCTACTTCCTCATGGACCAGGGCGACTTCTTCGTGCACTTCATGGACCTCGCGGAGGAGGAGCTCCGGAAGCCGGTGGAGGACATCACGCCCCCTCGCCTGGAAGCGCTCCTGGAGCTGGCGCTGCGCATGAGCACGGCCAACACTGACCCCTTCAAGGACGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640:ENST00000252936:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.6=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGAGTGTGGCCATGAC
R:
CTTGAGGTCGTCCTTGAAGGG
Band lengths:
345-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains