GgaINT0044552 @ galGal4
Intron Retention
Gene
ENSGALG00000003526 | TUBGCP2
Description
gamma-tubulin complex component 2 [Source:RefSeq peptide;Acc:NP_001006496]
Coordinates
chr6:8889272-8890525:-
Coord C1 exon
chr6:8890345-8890525
Coord A exon
chr6:8889453-8890344
Coord C2 exon
chr6:8889272-8889452
Length
892 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
ATCTTCATTTTCTTGAGCAGATC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGAAATATTTGAATGTTGTGAGAGAATGTGGACGTGATGTTACCTGCCCAGTGGCTAAAGAGGTCATCTATACTTTAAAAGAGCGAGCATATGTGGAACAAATAGAAAAAGCATATAACTATGCTAGCAAAGTTCTTCTGGATTTCCTGATGGAGGAGAAAGAGCTTGTGGCTCACCTAAG
Seq A exon
GTTTGATTTATTTTATTAAATACATGTTAAATAGGTTGGTTCTGATTACAAATGTCAGGTTTTAAAGTTAGCTCTCTTTTCTTGGGATATTCACTCTGTTTCTGTTAGAAATGTTGACCTGAAGAAAAAAAAAACACAAAAAAAAGACTTGTTTTCTCCTGAAATAAAATGAAAAAGAAACGTAAAATCATAGAAATGTTGGATGGGAGGGACCTTTAGGGGTCTCTCATCCTACTTTCTGCTGGAAGGCTACCACCAAAACTACGTTCTGCCAAAACTGGCCACTAGGCTTTATCTGACTTTATCTGACTCTGTCTTGAAATTGCCTGCAGCCACATTGGTTTAAGGCTGTGCCAGTCCCATTTTTGCTCCAAAAAGTGCCGTTGATTATGTATGGTGTCTGACAAGACGCAAACCTCATTCTCCAGCTTTCCTGAGAGCTATTTCCAATCCCATTGCAGTTGACTGTCCCTGAGGTCTGGTGAAAATTGTAGTTGGTGCATCATACTATAGCAGAAGTCGACATAAGCGCATGGACTGCTTCAGAAGTCAGCACAGATACTTGGACAAGAGAGTCCATGATTCTGCTCTAAGATGGCAGCTGCCTCTTGGGTGGATCTGGACTCTGGAGGTTGGGTTGTTGTCCAGGGTAGCAGTGTAATCCATTGCCTAGCAGTAGAGTGCATACCTTTATTCTCAAGGTCCATTTTTACAGGAGCAAAAGAACAGCTGCACGATAATGTCCTGACTGAGGTGACAGAAGTAGGACAGCACACATTACAAAATACATATATATAGTTTCCAAACAGGTTATTTTTATCTGTTAAAAAAGCAAGTTAAGAAACATGTTTTTTTTGGAAACATAATCAATGATCTTCATTTTCTTGAGCAG
Seq C2 exon
ATCTATAAAACATTATTTCCTGATGGATCAAGGGGACTTTTTTGTTCACTTCATGGATCTCACAGAAGAGGAACTTAAGAAGCCTGTAGATGACATCATAACTACTAGGCTAGAAGCACTGCTTGAGTTGGCCTTGCGAATGAGCACAGCCAACACAGATCCTTTCAAGGATGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526:ENSGALT00000040987:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.6=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAATGTTGTGAGAGAATGTGGAC
R:
TTGAAAGGATCTGTGTTGGCTGT
Band lengths:
342-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]