MmuINT0168160 @ mm9
Intron Retention
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:147190698-147191349:-
Coord C1 exon
chr7:147191169-147191349
Coord A exon
chr7:147190879-147191168
Coord C2 exon
chr7:147190698-147190878
Length
290 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGA
5' ss Score
2.95
3' ss Seq
GTTCACCAACCCTGACACAGGTC
3' ss Score
4.61
Exon sequences
Seq C1 exon
GAAAATACCTAAATGTGGTCAGAGAGTGTGGTCATGATGTCACCTGTCCCGTAGCCAAAGAAATCATCTATACCCTTAAAGAGCGGGCATATGTGGAGCAGATAGAGAAAGCGTTCAATTATGCCAGCAAAGTGCTGCTGGACTTCCTCATGGAGGAGAAGGAGCTGGTGGCCCACCTGAG
Seq A exon
GTTGGACTTCACTTTGTATCCATGGGGCTGAAAGTAGAATGCTCTTCTTAGCAACTACATTTTTTATCTCTCCACAGGCTCTCTGCAGCCTCAGTGTGAGGTGGCAGGGTCTCCTCAGTTCTCTAGTTCTCAGACCGTACAAGCCAACAGGTCTCTCAGCTCCTTGCTGTCAGTCCCTCCTCTGCCATGCCTGAGCAGAGCAGCCCCATGTCTGTCTGAGAGCTGCCAAACCTCTGTATGATGTATGGTGGAGGCAGGGTCAGGCTATATGTTCACCAACCCTGACACAG
Seq C2 exon
GTCCATCAAGCGCTACTTCCTGATGGACCAGGGGGACTTCTTCGTGCATTTCATGGACCTGACTGAGGAGGAGCTCAGGAAGCCAGTGGAGGACATCATACTCACACGCCTGGAGGCCCTGTTGGAGCTGGCCCTGCGAATGAGCACTGCCAACACTGACCCCTTCAAAGACGACCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-Tubgcp2:NM_133755:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.6=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCCCGTAGCCAAAGAA
R:
GTCAGTGTTGGCAGTGCTCAT
Band lengths:
300-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: