GgaINT0044552 @ galGal3
Intron Retention
Gene
ENSGALG00000003526 | Q5ZKY5_CHICK
Description
NA
Coordinates
chr6:10472300-10473553:-
Coord C1 exon
chr6:10473373-10473553
Coord A exon
chr6:10472481-10473372
Coord C2 exon
chr6:10472300-10472480
Length
892 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
ATCTTCATTTTCTTGAGCAGATC
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGAAATATTTGAATGTTGTGAGAGAATGTGGACGTGATGTTACCTGCCCAGTGGCTAAAGAGGTCATCTATACTTTAAAAGAGCGAGCATATGTGGAACAAATAGAAAAAGCATATAACTATGCTAGCAAAGTTCTTCTGGATTTCCTGATGGAGGAGAAAGAGCTTGTGGCTCACCTAAG
Seq A exon
GTTTGATTTATTTTATTAAATACATGTTAAATAGGTTGGTTCTGATTACAAATGTCAGGTTTTAAAGTTAGCTCTCTTTTCTTGGGATATTCACTCTGTTTCTGTTAGAAATGTTGACCTGAAGAAAAAAAAAACACAAAAAAAAGACTTGTTTTCTCCTGAAATAAAATGAAAAAGAAACGTAAAATCATAGAAATGTTGGATGGGAGGGACCTTTAGGGGTCTCTCATCCTACTTTCTGCTGGAAGGCTACCACCAAAACTACGTTCTGCCAAAACTGGCCACTAGGCTTTATCTGACTTTATCTGACTCTGTCTTGAAATTGCCTGCAGCCACATTGGTTTAAGGCTGTGCCAGTCCCATTTTTGCTCCAAAAAGTGCCGTTGATTATGTATGGTGTCTGACAAGACGCAAACCTCATTCTCCAGCTTTCCTGAGAGCTATTTCCAATCCCATTGCAGTTGACTGTCCCTGAGGTCTGGTGAAAATTGTAGTTGGTGCATCATACTATAGCAGAAGTCGACATAAGCGCATGGACTGCTTCAGAAGTCAGCACAGATACTTGGACAAGAGAGTCCATGATTCTGCTCTAAGATGGCAGCTGCCTCTTGGGTGGATCTGGACTCTGGAGGTTGGGTTGTTGTCCAGGGTAGCAGTGTAATCCATTGCCTAGCAGTAGAGTGCATACCTTTATTCTCAAGGTCCATTTTTACAGGAGCAAAAGAACAGCTGCACGATAATGTCCTGACTGAGGTGACAGAAGTAGGACAGCACACATTACAAAATACATATATATAGTTTCCAAACAGGTTATTTTTATCTGTTAAAAAAGCAAGTTAAGAAACATGTTTTTTTTGGAAACATAATCAATGATCTTCATTTTCTTGAGCAG
Seq C2 exon
ATCTATAAAACATTATTTCCTGATGGATCAAGGGGACTTTTTTGTTCACTTCATGGATCTCACAGAAGAGGAACTTAAGAAGCCTGTAGATGACATCATAACTACTAGGCTAGAAGCACTGCTTGAGTTGGCCTTGCGAATGAGCACAGCCAACACAGATCCTTTCAAGGATGATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526:ENSGALT00000040987:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.5=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAATGTTGTGAGAGAATGTGGAC
R:
TTGAAAGGATCTGTGTTGGCTGT
Band lengths:
342-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]