BtaINT0155899 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90838503-90839228:+
Coord C1 exon
chrX:90838503-90838635
Coord A exon
chrX:90838636-90839130
Coord C2 exon
chrX:90839131-90839228
Length
495 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATTTTCCCTGTCTATCCTAGGTC
3' ss Score
11.27
Exon sequences
Seq C1 exon
GACAACCCCGGTGTTGTTACTTGTCTGGATGAGGCCCGACATGGCTTTGAGAGTGGTGACTTCGTCTCCTTTTCGGAAGTACAGGGCATGATTGAACTCAATGGAAGTCAGCCCATGGAAATCAAAGTTCTGG
Seq A exon
GTGAGCTAGGGCCAGGGGGGAACCAGGGGAGATAGGAGGCGTTTCCCTGGGCTCTGCGTGAGGGGAGACACATCCTGGGTATCTGGGATGAACCAGAGGTAGAGTTTCCTAAGGTCTACCCAGCAGGGTGTGGGAGAGAAGTGCTGTCTTGTGTTTGAGCTGTTCGTAGAATAGGCCCCTGATGTCTGCACTGAGGGGAGGCAAGGTCTCTGGTGTTTGAACAAAGATCAGAGGATCCACTTGTGTCTGAGCTGATTCAGACAGGGAGCAGAGAACGTCTTCCATTGTAGACTTGGGGTTAGAGATGCGGGGTCCCATGGGTGCTGGGTCTGGGGTAGAGGGGAGATGGTTTCTGAAGTTCGAGTAGAACTCAGGATGGAGAGGAGATTACTCCTGATATCCGAGCTGGGTCAGGAATGGATTTTCCCTCATCTCGTAGGTGGTTGTAGGTTTTAGGGAGAGTGGGTGTCCTGACATTTTCCCTGTCTATCCTAG
Seq C2 exon
GTCCTTACACCTTTAGCATCTGTGACACCTCCAACTTCTCTGACTACATCCGCGGAGGCATCGTCAGCCAGGTCAAAGTACCCAAGAAGATCAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCCCGGTGTTGTTACT
R:
AAGCTGATCTTCTTGGGTACTTTGA
Band lengths:
230-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]