HsaINT0176016 @ hg19
Intron Retention
Gene
ENSG00000130985 | UBA1
Description
ubiquitin-like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:12469]
Coordinates
chrX:47060877-47061652:+
Coord C1 exon
chrX:47060877-47061009
Coord A exon
chrX:47061010-47061554
Coord C2 exon
chrX:47061555-47061652
Length
545 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCTCTTCCTGCCCTCTGTAGGTC
3' ss Score
12.09
Exon sequences
Seq C1 exon
GACAACCCCGGTGTGGTTACCTGCCTGGATGAGGCCCGACACGGGTTTGAGAGCGGGGACTTTGTCTCCTTTTCAGAAGTACAGGGCATGGTTGAACTCAACGGAAATCAGCCCATGGAGATCAAAGTCCTGG
Seq A exon
GTGAGCTGCGACCATGGGGGAAGCAGAGGGGAACTAGAAGATATGTTCCTGGGTTCTGGCCGGGGAGTTGAAGGGAGAAGACATGGCCCTTGGTTCAGAGTTGGGAAGACACATCCTGGTGTTTGAGATGAACTACAGACAATCCTGTGGGGTCCAATAAGAGCTGGTGGGCATGGGGGAGAGGTACTGTGTTTGAGCTATTCCTGGGAGAATGTGTCCCTGGTATCTGAGCTGAGTGGGGAAAAAGTCTCTGGTGTTTGAACAGGGCAGATCAGCGGATCTACTTGTGTGTGAGCTGATTTGGATGGGAAGCAGAGAAGGTCTTCCCGTGTAGACTTGGAGCCAGGGACACAGGGTCTCACGGGGTCTGAGCTGAGTCTGGGGCACAGGAGAGATGGTTTCTGATGTCCAAGTGGAGCCTGGAGCTGAGGGAAGACAGCTTCTGATGTCTGAGCTGAGTCGGGGCAGGAGGTTCCTTATCTTGCAGGGGTTGTGGATTTTAGGGAGAATGGGTAGACTGACAGCTCTCTTCCTGCCCTCTGTAG
Seq C2 exon
GTCCTTATACCTTTAGCATCTGTGACACCTCCAACTTCTCCGACTACATCCGTGGAGGCATCGTCAGTCAGGTCAAAGTACCTAAGAAGATTAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985-UBA1:NM_003334:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCCCGGTGTGGTTAC
R:
CTTCTTAGGTACTTTGACCTGACTGA
Band lengths:
222-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)