RnoINT0158941 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1734038-1734760:-
Coord C1 exon
chrX:1734628-1734760
Coord A exon
chrX:1734136-1734627
Coord C2 exon
chrX:1734038-1734135
Length
492 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCCCTATCTACTCTATCTAGGTC
3' ss Score
9.31
Exon sequences
Seq C1 exon
GACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTGAGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGGTCCAACTCAATGGATGTCAGCCCATAGAGATCAAAGTGCTGG
Seq A exon
GTGAGCTGGGACCATGGGGGTATCATAGGGGAACTGGCTAGGAGAGTTAAAAGAAAGGAGTTCAGAGTGATGGGCACTATATCTTGAGTGCCTGAAGTGGATCAGAGAATCCAGGATCCCACAAGAGCCAATGGACATGGGGAAGAAGGGCCAACTATGTTTGAATTGTTAATGAGCATGGGCCCCCAGGGTCTGAGTTGAGGAGAAGGAGCTTCTTGTGTTTTGAACAAACAGGGCAGATCAAAAGATCTGATCATGTCAGTGATCACCTGACATTAGTGTAGACCTGGGACCAATGACAAGAGAGTTTCATGGTGTCTGAACTAGCTCTGAAGCAGAGGGGAGATAGTTTCCTATCCCCAGTGGGGATTGTGGTTCAAAAAGTACCTGGTGTCTACATTGGGTCAGGCATATTTTTTTCCTTGTCTCTTGAGTTTTGTAAATTTAAGAGGGCATGCAAGATTGACAAGCTTCCCTATCTACTCTATCTAG
Seq C2 exon
GTCCTTATACTTTTAGTATCTGTGACACCTCCAACTTCTCTGACTACATCCGTGGAGGCATCGTCAGCCAGGTCAAAGTACCTAAAAAGATTAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCCCGGTGTGGTTAC
R:
TCTTTTTAGGTACTTTGACCTGGCT
Band lengths:
223-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]