MmuINT0168788 @ mm10
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20670741-20671453:+
Coord C1 exon
chrX:20670741-20670873
Coord A exon
chrX:20670874-20671355
Coord C2 exon
chrX:20671356-20671453
Length
482 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CTCCCTATCTACTACTCTAGGTC
3' ss Score
9.9
Exon sequences
Seq C1 exon
GACAACCCCGGTGTGGTTACCTGCCTTGATGAGGCCCGACATGGCTTTGAGACTGGTGACTTCGTCTCATTCTCAGAAGTACAGGGCATGATCCAACTCAATGGATGTCAGCCCATGGAGATCAAAGTGCTGG
Seq A exon
GTGAGCTGGGGCCATGGAAGTATCATAGGGGAACTGGTTAGGAGATTTGAAAGAGAAGAGTCCCTGGGTTCAGAGTGATGGGAGCTATATCCTGAGTGCCTGAAGTCGATCAAAGAATCTAGTAAGACCCACCAGAGCCAGTGAACATGGGGAAGAAGGGCCAACTGTTCGATTGTTAATAGGAGCATGGGCCCCTAGGATCTGAGTTGTATTTTGAATGGGGCATCATGTCTCAACTGATTTGGGGAAAAGCAGCCTATCAGTATAGGCCTGGGACCAGGGACATGAGAGTCTCATGATATCTGAACTAGCTCTGAAGCAGGGGGGAGATAGTTTCTGATCCCCAGTGAGAACTGTAGTTGAAAGGGTATCTGGTGTCTACATTGAGTCAGGCATATGGTTTTTTTTTCCTTTGTCTCTTGAGTTTTGTAAACTTTAAGGAGGGCATATAAGACTGACAGCCTCCCTATCTACTACTCTAG
Seq C2 exon
GTCCTTATACCTTTAGTATCTGTGACACTTCCAACTTCTCTGACTACATCCGTGGAGGCATCGTCAGTCAGGTCAAAGTACCGAAAAAGATTAGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924:ENSMUST00000089217:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCCCGGTGTGGTTAC
R:
TCTTTTTCGGTACTTTGACCTGACT
Band lengths:
223-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types