BtaINT0156005 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039851 | UBAC1
Description
Bos taurus UBA domain containing 1 (UBAC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076281]
Coordinates
chr11:103515902-103520946:-
Coord C1 exon
chr11:103520808-103520946
Coord A exon
chr11:103516462-103520807
Coord C2 exon
chr11:103515902-103516461
Length
4346 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
3' ss Seq
AGCTCTGCGTGTCCCCACAGCAT
3' ss Score
8.79
Exon sequences
Seq C1 exon
TGCGAATGGCTGCTGGGCGACCGCAGGCCCTCTCCCGAGGAGCTGGACAAGGGCATCGACCCCGAGAGCCCCCTGTTTCAGGCCATTCTGGACAACCCCGTGGTGCAGCTGGGCCTGACCAACCCGAAGACCTTACTAG
Seq A exon
GTGCGTGCCTTGCTGCTGCCCGGCGGGGCGGGGCCCTCCCGCCACACAGATGTCCCTGGGCGATACTATGGGCGTGCCGCCCCTGCAGGGCTCTGGTGGCTGGGGCCCGGCTGTGACAGCCTCCTGTGCGGTGACTCCATTCCAGCTCTGAAAAACCAGCTCCAGCAGGTGATCCGGTTGGGAGAGTGTAGACAGCGCCCAGCAGGTCAGGGCCGTGCCCAGAGGAGGCTTCGTTGGCTGGTGGCTCTTAGTCTCTGTAAGGGTTGCCTCGGTGCTTGTTTTGCCTATGAGATACGATATGATATAAAAAAGTGTGTATAATTTCTGTCACTTTAAAGAGTGATAGTAAAATTAATAACCACGTTTCTGCTGTTCATCTTGAAAAAAAAGCGGTCTTTTAAAAAAATCATAGTGCGATGCAGGCACCCTTGAGTCCCTGGGTGCCCCCCCAGCCCCTGCTGCAATGACCCCCCCCAACTCCCGCTGCAGTGACCTCCCAGCCCCCACTGCAGTGACCTCCCAGCCCCTGCTGCAGTTACCCCCTCCCTGCCCCGAATGGGGGCTTCCTCAGCAATGTCAGTGGGGGTGTCCGTGTCCTCAGACCATTCAGTCGCCCCTCTGTGTTCTGGGCTGACCCCTGGGACTGGCTTCCTGGAGGCTGTGTGGTGCAGCATTGCAGGGCAGTGCCACATCCGAGCCTGCTGCGCGGCTGCCCGATGGCCTGCGGCTTCTGGGCCGGTGAAGCTGCTCTGGGCATTCCTGTGCCTGGTTCTCAGGGGAGGGTTCCCCCAGGGTTCCGTGCCTTGGGCCGAGTGGCAGGGCCCTGGGCGTGGGTGTGTTGAGCCAGAAAGGGACCCCCGCCCACAGCAGCTTAGGGCCCCCGCTGCCAGGTGCCAGGAGCAGCCGCCCAGGCAGGCACAGGGCTTTTGCATGCTTGGCCATCTCCCCAGTCTCTGAAGGACAGCCTCTTCCAGAAGTTTCAGCCACTCCTAGGACCTCCACTGCCCCTCTTCTCTGGCTGCTTCTGCTACTGGATTGCCGTCTGATAGCTCAGAACCTTCTCGTGCCTGCTGCACACTGATCCTTTCTCAGATATTTAAATCTCCAGGATCCCCTGTCTGTTTCTGCCTTCTCTGTTGATCCCTTTGATGAACTTCTGTCCTGTATCTTAACACAGCAGAACATCTCTATTTCATTTATGACATGCATCTTTAAAGAAAGCCCTCTGATTCCAAGCTTGGGAAGACCTTCACGTGTTTCTTTTTTTAGTAGTTTTAAATTTTCTTGTTTTAAAAAGTCTGTGATTCGCCTGGAAGAGTGAGTGGCGTGAAGCAGGGAGTTTTTCTCTCTGTGCCTCACTCCGGGCTTCAGTGGTGTGTCTTGTGAGCTGGTTTCCACTTTCTCTGTCAGTCCCCTCCACACTGGAAGCGTCTTCTGGCCCTCCTCCCCAGAGACCTCAGGACGGCCCCGTGTACCGCCGGGTCTGTCCAAAGCCTTTCCTAAACATTTCTTTCAGTGCTCGACCATCGAGTGTGTGATTTGCTGATTTGCTCTAAGCTTTTTTTTTTAATTTTTGAAGGCATAGTTGGTCAGATTAAGTTCCCCTTTTCTCTCTAGTTAGATGCTAAGATTTTTCAATTGTGAGTGGGAGGTCAGCTTCCTGGGTGACTTTTCGCTGTCTATCGAGATTATCGTGTGGTTTTACATCTGCTGTATCAAGTGTTTCTTGCATTTCTAAAACAAACCACCCAGAGTGAGTGCTGCCTGGTCTATAGGCCCTGGGTCGGTGATCTGGACGGGCCGCGCACTGGCGCAGGGTCCTCCCCGCCAGACCCCAGGCCCAGGGTCCTGCAGGAGAGAGCGTCCCATGGTGAGTGCGCCCCTGCAGCCACACACTTCCCTCCAGGCATTTCTGGTAGGGTTTTAATGGCCTTTATCTCTTTGCTGCTGCTGCTGCTAAGTCGCCTCAGTCGGGTCCGACTCTGTGCGACCCCATAGACGGGAGCCCACCAGGCTCCCCCGGCCCTGGGATTCTGCAGGCAAGAACGCTGGAGTGGGTTGCCATTTCCTTCTCCAATGCAGGAAAGTAAAAAGTGAAAGTGAAGTCGCTCAGTCATGTCCGACTCTTAGTGACCCCATGGACTGCAGCCCACCAGACTTCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGCGGTGCCATTGCCTTCTCCTTTATCTCTTTAGATGAAGGAAAATACGCACTATAGGACATTTGGACACACAGGGAAGCTTGAGGAAGCGGAAGTCACCAGCGCCCCCAAGCTGGTGGGTTTCCTTCCGGTGTATGGTGAGGTCTGGCGAGGTCTGGAGCAGCCGCAGCGCACGGCAGCTTTCTGGTGCTTCATTTCTCATCACGTTTGATACATTTTCTCTTTTAAAAATGAGACTGTAGCAGTTCAGGTATTTCATTCTATGGATGTGTCGTATCATTTAACAAATACATTAAATCTGTTAATTCATGTTAATAATATGACTTAGAAACTAAACAGCAAGGAAGCAGCAACTGAGCTGAACCCACCCCCTGCTTGTGGTCGTGAAACCGCCTGCCTTTCAGCCGGCCTCGCAGCCTTTGGCACTTGGCCTTCTAAAGTGAAGCGTCTCAGACGTCATCTCTGAGTGTGTATGGCTCTTTGCTGTTGTTCTTTAGTCTCTGAGTCACGTGTGACTCTCGCGACCCCGTGGACTGTGCAGCCCACCGGGCTCCTCTGTCCGTGGGAGTTCACAGGCAGGAATACTGGAGCGGGTTGCCGTTTCCTTCTCCAGGAACTTTTAGCTCTAATAGTCCATAAAACAGTGGAAACGTCCTGAATTAAGAAAGAAGACAAAAATTCTAAAAGTAAATTTCAATCCCCTTTGTTTTTATAGTTCAGTAAAGCATTTTTCCTCATAAAAAACAAGCGGTGTTCCATTTTGTTGCTTTTGAACTTCCACATGGAATAACCTGTGTTCAGACCCGCTTCTTTGGGTGTAGCTCCGACTGCCTGAGGACAGGCAGCTGCAAGGCAAATGAGCAAGGCCCAGAATGTGGACGTTAGGCGCTTGGGGACGTCTTGGCACCTGATGGGGCTTTCTGGGTGAGAAACCCACTCCCACCCTCCGCCCCAGACAGGGACCCAGCAGCTCCGTCTGTGCCTTTGAGCGCTTTCCTCCCGGCCTTTGCGTGTTCCTTGTCGCCTGTGCGCGCCTGCCGCTCTGCCTCAGCTGCCGAGTTGCCCTTAGAGTGCTGTCAGCAGCTTGTGGCGCGTCAGGGACCCCTCGGTCACGTGCACGCTTCTCATCTCTAATGACGCCCAGACGCGCGGCAGAAGGTCCTTCCTCGGGCAAACCTTCACCTCTGGTTTCCATATTTAGTGCTTTTCCCATCCTTTTGTGCAGCTCTGTCCTCCTCCCGGAGTTGATTGTGCCGCTTGCTGGGGGGAACGGGGGCCTGGGCTTCTCACCTCACGAAACCCACTTTATGTTTTGTTCTCCCGGATGCCGAGTCATCTTTCCGGGTTCTCTTTCTGAAATTTCAGTTGGGGGGCTTGGTGACTCTTTTCAGGGCTGGGAGGGTCATCAGGTTGTAAACATAACGAGGTCAGACTTTCCCATTGAGCCCGGGGCTAGGGCCCTCATGACCCTGAGCAGCTGAGAGCCCGCAGACTGGGGGCCACTTTCACGAGGACATGGTTTGACGTTGGCTGACATGACGAGCTCTGGTGTAAAGCCGTCCTTCCCAGATCCGAGGGCGACCGTCCGCCCTGCGGTTGGTTGCTGTCCACCAAGTTGGCCATCGTGTGTCTGGGCTGGAGAGCTTTTTTGCTAAGAGGCACCTTTGTTCGGTGAGGGGTCGCTTTATAAAAGTGTTTAAAAATTCAACGTTTTCATCTCAGAGAACTGCTCATTTTTAATGTGCTGTTTTTTTTTATTTTTTTAAAGTCATTTCCTGAAGATTGAGCAGTTTGACTTTTCTAGTTAGATACTATTAAGCTGGCAACATCATCCTTACATAAGTCTTTTCTGTCAGGGTGGGCCTGAAAGTGGAGTCACTGAGTCACGGGCTGTCACTGTTTTAAGATTCCTAGTAGCTGTTGCCACGTTGCTTTCCAGAATCCCTGTGCCAGGGAATGCGGGCGTGTCGCCCCGCCCTACCCACAGTGACCACACCTGCTTCTGTATCAGCAGATGAGACGCGTGGGGCGGGGGGCTGAGGGGGGTTCCCGGTCGCGCTCACCTGGAAGCTGCCGGGAGGAGAGCTCCCACCGCTGCGTGTTGGGCGTGCAGGGCGCAGTCCCCCAGCAGCTCTGCGTGTCCCCACAG
Seq C2 exon
CATTTGAAGACATGCTCGAGAACCCGCTGAACAGCACCCAGTGGATGAACGACCCGGAGACGGGCCCGGTCATGCTGCAGATCTCCAGAATCTTCCAGACCCTGAACCGCACATAGGCCGTGCACTGCAGCTGCCAGGCCCAGAGAGCCTCTTCTTCCCAGCCCAAGGGGTGGGGAGAGCGTGCAGACCCCAGGGTGCCCCTGGGCTGGGGGCGGGGAGCAGGTGGGCTGGAGGGGACCCTGCCCTGGGTGTTGGGCGCCAGGGCCGCACTCCCGCTGGGATCTTCCTGTGAAAAACCTCGGGTGGCAGCGTGCTCGGTTGGCCTCCAGCCTCTGACAGTGTTTACAGACAAGGCCGTCACCCTGGGAAGGGGTCGCCTCCCTCCAGCGTCCCCTGGGCTCTTGAACCGCTACTTGAATTAACCGTAGGCGCTGCTTGTAGAGTCCACTTGTTATTTGAAACAAGGCATGTTTCAATCCAAAGTGTTATCGTCAAAGGTACTAACTTGAGTAGAAGAATTCACAGATGACTTCTCTTTAATAAATAAATTCTCCTTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039851:ENSBTAT00000033827:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(8.1=6.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development