RnoINT0159052 @ rn6
Intron Retention
Gene
ENSRNOG00000017983 | Ubac1
Description
UBA domain containing 1 [Source:RGD Symbol;Acc:1359542]
Coordinates
chr3:3453401-3460639:-
Coord C1 exon
chr3:3460501-3460639
Coord A exon
chr3:3453922-3460500
Coord C2 exon
chr3:3453401-3453921
Length
6579 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
GCTCTGTTGTCTCCCCACAGCAT
3' ss Score
10.7
Exon sequences
Seq C1 exon
TGTGAATGGCTGCTGGGGGACCGGAAGCCATCCCCTGAGGAGTTGGACCAGGGCATCGATCCCAATAGCCCTCTCTTTCAGGCCATCCTGGACAACCCAGTGGTGCAGCTGGGTTTGACAAACCCTAAGACATTGCTAG
Seq A exon
GTATGTGTGTTTACTTAGGCTAGCTTGGGTGAGGAACACATGGCGGGTGGATTCCCTGCCACAAGACAGGTGCTAGTGAAATGGTTTGTGCACTGCTCCTGTGCCATGTAGGCTGGCTTATGCAAGACGGTGTAGCTGTGCTTCTGAAAGCCTGGGAGTCAGGCTCTGCTTTGATGGGATGAGCTTCTGCAGAGGGGACTTGGACAAGCAGAGCAGTGGTCTGTGTGGGAATAGGAGAGGAGGAGACAGTATGGTTTGACTTTTGCCTACTACTTATAAGGAATTTCTTTGATGATTACTGTTTACTTGTAATATATACTAAAAATCTACATAATGGGGCTAACAAGGTTAGTGGGTATTTGCTGGTAAGTCTGAGTTTGACCCCTGGAAACCACATGGTAGAAGGTGAGAGCTGACTTCTGCTTGCACACTGTGGCATGTGCATCCCCCAAGTAAATAAATAAATGCTAAAAATATAAATAAAACCTGTCTGCCACTTTAAAAATAGGGCGGCGGTATAGTAGGGCTTGCCTTTAATCCCAGCACTCAGGAGACAGAGGCAGCAGATCTCTGAGTTTGAGGCTGGCATGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAGACCTGTCTCACAAAACAAACAAACAAACAAACAAAAAAAACTAAACGAAAACAAAAAAGTAATAGAACTAAATAGTTAGGAACATGTCATTCAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGGGGGGGAAAAAAAAGGAACATGCCATTCATTTGAAAACTGTCATGGTGGCCACGCCTGTATCTCAGCACTTGGAAGGCAGAGGCGAGAATTGAGAGGTCTGGGTCAGCCTGTAGGTCTCCCCACACAGCAGTCATCGTTGGTGTCCATAGTCCTGGTTCCAGGAGTGTATGCAGACATTCAGGTCTCTCACGGTGGAACCTGGAGACTGATGTGACCTACACCTGTAGTCCTAGAGATTGAACGACAGAGTTCCAGGTCAGCCTGCGCTAAGAGTGAGACCTTGTCTCAAAGAAACAGCAGAGAAAGCATAGTATTGCTTATGCTTATAGATTCCTTTTGGCTTCTAATGTGACATAAATGCCAGGAGTGTGGCTGTGGTTCTGAATTGTTCAGGGGGATGACAGGATGAAAAGTCTGCATGTGTTTATGTATATACACTTTTTTCCCTTGAAGGTTTTTGTTTTTTGAACCAGCTACACAGCCTCCTGATTCAAGCTGGGCTCACTTCAGTGTTTCAGTCCTGTGAGTGCAGAGCTCTGATCCATCTGGTCCCTACTCCCTCTGACCCTCACATGCCTTTCCTATACATCATTGTCCCCTGCATACAAGTATGTCCGTGACCCCGAGGACTTACCCTCCTTGGCTTTCTGTAGGGTTTGCACATTTTCTGTATGTCACTTGTCCCTGCCTTATAATGTGGCATCACTTTTTAGGGCATTTCTGAGGCTTACTGCCATATCTCCTGTGAGGTGTTGGAAACTGTTCACCAGGGCTCAGGAGTGACTGTACCCTGCTGTCCAGTGCTGTGTGGATCATTTCCTAGCATGAAGGAACTCTTTTCTGTCCCTCATTGCTAATGGGCTCCTCTGCTGCGCTTCCAGGGCTCGGGTGAGCACAAAGAGAAGGAATTGCTGCCTGGGCCTACTGTGTCCTCGTGTTCTCTGGTCTAGAAGCTCAGCCATGGGCACAGCACAGGATTTCCACCTGTTTCCTTCTTTCTTTTCCTTCTACATTCCTCCTTTCTTCATTTACTGAGGAAGTCCTTCACACAATCTGAACACTAGCTCTTTCTAGCTTACTGTGTGTGTTGTCCCATTTCTGGTTTCCTATCAAGTGGCTTTTGGGAACAGAAGTCCTCTGTTTTCTTGAACTTTTTTTTATAGTCAGAAAGGCATTTCTCTTAGGTTGTTGGAAAGTTTTGAAGTTTTTTAAGTCTGTCATTTAGCGAAAGTATGCATGTATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCAGGTGTGTGGTTGTAAAATGTACAGTATAAGGAACACAGTTGTCCCTTATGTATTTGAGGCTGTGTTTGGTATTCTCATTGTCTCTGGTCTTTCACACTGAGAACTTCCCTCCCCTAACTCTTGTCAGGCTGTTTGTACATCTTTTTGTTGTTGTTTTTTTGTTTTTTCTTTACAGGGTTTCTCTCTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGTCTGGCTTCGAGCTCACAGAGATCCATCTTCCTCTGCTTCTAAGTGCTAGGATTATAGCTGTGGTCCACCACCACCTGCCTAATAGCTTTTAAGAAATGTCTCACACTTCCACTGAGAACTTCCCTCCCCTAACTCTTGTCAGGCTGTTTGTACATCTTTTTGTTGTTGTTTTTTTGTTTTTTCAAGACAGGGTTTCTCTCTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGTCTGGCTTCGAGCTCAGAGAGATCCATCTTCCTCTGCTTCTAAGTGCTAGGATTAAAGCTGTGGTCCACCACCACCTGGCTAATAGCTTTTAAGAAATGTCTCACACTTCCACATTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCCGATGCAGAGGCCATGGAGGGATGTTTCTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCTTTGCTTTCTTATGAACCCAGGACCACCAGCCCAGGGATGGCACCACCCACAGTGGGCTGGGTCCCTCCCCCTTGATCACTGACTGAGAAAATGCCTTATAGCTGGGTCTCATGGAGGCATTTCCTCAAGGGAAGCTCCTTTCTCTCTGACAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTACAAGAAATAAATAGCAGGTGCTGTCTTGGGATCTGACCAGAGGACTTTTTTTTATTTTGGGCTGGGATTTCAGCTCCTGGCGTGCTAAGTACACTCTGTGACTGAGCTTTCTTTTCATATGTCAGTGTGCACTTGGCTGTGTGTATTGGTTAGTGTGTTTTAAGGTGCGTTTGGCCAGATAAGAGAAACTCCATGCTCATTTTAGGTAGTGGGTATTTAACCTTCCTTCTTTAGAGTACCAGGTGTACGTTTAGCTAGTGCCAGTTCTTTTTCTTTTCTGAAATAAACCACCAGAGTGAGCACACTTACTCTGTACCTGGTGGGGTCTGGGGCCGGAGGGCAGGACAGAGATGTGTAGACTGCTCCTTAGAGCAGCACCCTGTCACAGGGCATGGCGTCAGCACTCGGCATGACAGGCCTGAGTTGGCAGTGTGCATCTGGCTCTCAGCCGTGTCTGCACTGCAGGGCTGACGCCATCCCTGCAGAACTCCTGTGAAGGTCCAGAGCAGCCAGGGTGGCCTGCTTGTGCAGTCTCCTGCAGGGATGTGTATCTTTCTCAAGCTCTAACTAGATATTTGTGATGTGTACTAATAAAATAAAAGCAGCTACCTTGGGCTGGGGAGATGGCTGAGAGAGTAAAGATACTTGCCACCAAGTCCAACAACTTGGGGTTGATCCCTGGAACTCACATAGAGAAAACCAGCTTCACAAATTGTTCTCTGACCTTCCTGCACAATGAGGTATGCTCTTTCAATATATAAAGAAATAAACTTTAAAAATCAAGAAATTCCCAGTCCTGTGACCTTTATGTTTTATCAGAAATATATTTATTTTAGCAAATTTGTAAGTAGAAGTCACCTTGAAGCCCTTTCATGAGTCTGTGTCATTCTGGTGCTTCTATTTTTCAGAGTCTTGCTACATAGCCCTGGCTGGCGGGCCTCAAACCTGTGCTGTCCTCCCACCTTAGCCTTCCCTGTGCTCGGTGTGCCTCTGCCTGGCTTTCAGGCATGTGGTGTCTGTAGGGACAGTGGTCCTGAGGTACTGCTTGCGTGACTCTGACACATCACACTGTGTTCTCACCATCTGAGGCAATGTTTGGTGATTGCAAACAGTTGGCTCTGTGGATGTTCTGTTACTTGGACAGCATGGTACCCTGCTTTTGGTTCCGTAGATTGCTTTCTGTCTGGCTATAGAAGGGCATGTTGTGGCCGCAAGCTTTTCTTGTGCCCTGTAGTCTGGGTACAGCTTGCTTTCCCAAGGATAAGCAGCATCACACGAGTAGGTGAGAGGCTGGGCATTGAGCTCTTGCCTATGTCCGTCTGAGCGCTGCGTGTCAGCACTGCCCAGTACTCCCTGTTGGGCTCTGCATCTCTCCTTTCCTATGTGCTCTGGGAATTGCATCTGTTTTCAGCTGTGACACTCATTTTAGAGCTTACGCAGGGAAGGAACACCTGCCTGTTGACGCTGCCTACCATGGCGCTGGTTTGGGCTGCTTTGTGGGTTCTTCTTTCTACTACTCTTCTCCATCCCCTCTCTGCCCTTTCAGCCCCGACACTAGTTGGGGGAGAAAAAAGAATAGAGGGAAAGGGGGCGATGGTATCATTAGACTACTTTCTGCTGGATTCCTAGGGACAAGTTTGATCTTTGACCTCAAGATACCTAATTTCTTCTTATTATTTCATGTTTGTGCATGACTACTTAATAAACCGTGACCAACAGCAACCAACCATCCAACAGCAGCCCACCCCACGCCCTGGGGCCCTAGCATCTATGAACCCTCTGAAAAGTCTCCAGAATCCCAAACATCACACGATCACAGAAACCATCTGCAGCTGGCAAAGTCAGTCCCCACACCTGGGATTAGAACAAAAACACAGTCCCATAATATTTTTGTGTTTTTTAAAGAAACCAAGACTAATTATTACTGCATTGCCTGATGTTCCTGATGTGCCTTCGTTTTCTAGGGTCACTGTGTGTAGTATACATGCTTATGTGAACATGCACCTGTGCCTCAGATGGCTTCCATGTCACTGTGTAGTGTACGTGTGTGTTCATCACATTGTGCAGATGAACGTGAGTCTGCTGTGGAGGTCGACCTTGAGTGTCATTCCTCAGCTGCCTACACATCTCTCACATTATTTATTTGTGTGAGGGTATGCATCAGCATGCGGATGTCAAAGGACAGTTTGCAAGAGTTGTTGTTTTCCCTTCTACCTTGTGCATCTCTGGGATTGAACTCAGGTCATCAGACTTGGTGGCAAACTCTTTTACTTGTTAAGCCATTTTGCCAACTCCCATATCAATTTTTTGAGACAAGGACCCTTGTTAACTTGGAAATTGCTAGATTGACTAGCCAGTAAGCCCCAGGGTCTCCACCTCCCCAGTATTGGGAACGTAAGTATGTGCTATCATGCCCTGCTTTTATATGAATGCTGGTGATAATTAAGTCAGGCCCTCATTCTTGCATGGCAAGTGCTTTTATCCAGTGAGCCATCTCTCCAGCCCTAATTTTGTGAAGCTCTAGAAAATCAACGTTTGCCAGGTGGTGGTGGCGTGGTGCCCACCTTTAGTCCCAGCACTGTGGGAGGCAGAGACAGGTGGATCTCTGAGCCTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGGCTACCTTGTTTTAAACCAGAAAGAAGGAAAAGAGGAAAAGAAAAGGTTCTTATTAAAATATACTTTGTAACGGGTGTCTCCTTAGGGCAGTAGGCACAGTCTCATAAAATATACTTTGTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGAGCTTGTTTTAGTGATGTACCTGGGCCTGTGCATGCTGAGCAAATGATTACTGTCGGGCTGTACTGCAGTCTCCTGTGACACTGTGTTAGGGTTGAACATGTAGGTTTTTCTAAGATGGTGGAATTAAGTCTGCTGGCAGCACATGTAGTTACTCCCAGTACTTGGGAGGCAGAGGCAGGGGAATTCTTGAATTCAGGGCTAGTCTGGTCTACAGAGTGAGTTCCAGAAGAGCCAGAGCTACACAGAGATTTTTTTCTCAAAAGAAAGAAAAACCAATCTGCCAGAGCATATTTGTAGCAAGGAGTTTCACACAGCTGTCTCCTGTGCTGTGTGGAAAGGGATGTTTGCAAACCTGACTTCTGAGTCTTGCTGGAGGCTTTCCAGAGTTGGGGTCCCATAAGTCCAGGCTGTTGACCTCCTCACTAGTGGGCTGTGAGCACGCAGGCTGTCCATTGCCCTATCAACGACATAACCGTGGGCAGCTGACCACCCTATCCTGCTGATGGCTCTGAGCTAGGGTGCTGTGATCACACAGGCGGTCTATTTCCCTGCTCATGGCCCCTGAAGTCTGTTTGGTCAGTAGCTCAGGCACTGTGGTTGGCTGGTAAGGGTGAGTGTCAGGGTCAGCAGTGAGCTCTTTGTGTCCCTGTTCCCTTTCACTACAGGGCCATTGAAAAGGCTCAGTGTGCTCGTGGGTGTCTGGGGGCTGCTACTCAGCTCTGTTGTCTCCCCACAG
Seq C2 exon
CATTTGAAGACATGCTGGAGAACCCACTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCTGCAGATCTCGAGAATCTTCCAGACACTGAATCGCACGTAGGTGGTGCCTACTGTGCTCCTTGGCTGTGCAGTCTCAGCAGTCTGTGAGGCGGTGGGCGCAGGGCCCAGCCAGGATCTTGCCTGGATCACAGCTTCAGTGACTCTCCTTTCCTGACCTAACGGCTTGTCATCTTCTGCCACATGGTTTGAAAGTTGCAGTCCCAGCTTCTGACAGGTGTTTACAGAGAGTGGCTATTGCACTGGGAAGGTGGTGTTTGCTGCCCCGTCCCCTCCAGACACTCTGCTGGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGTGTTTGCTTGTGTAGCCCAATGTATTTTAAAGAAGGCATGTTCTGATCCAAAGTGTTATGTCAAGTGTGCTAATTTAACTAGACTGACTCACAGATGGCTTCTTTAATAAATAAACCCTTTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017983:ENSRNOT00000024352:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(8.1=6.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]