MmuINT0168902 @ mm10
Intron Retention
Gene
ENSMUSG00000036352 | Ubac1
Description
ubiquitin associated domain containing 1 [Source:MGI Symbol;Acc:MGI:1920995]
Coordinates
chr2:25998543-26005464:-
Coord C1 exon
chr2:26005326-26005464
Coord A exon
chr2:25999068-26005325
Coord C2 exon
chr2:25998543-25999067
Length
6258 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
GCTCTGTCGTCTTCCCACAGCAT
3' ss Score
9.27
Exon sequences
Seq C1 exon
TGTGAATGGCTGCTGGGGGACCGGAAGCCATCCCCTGAGGAATTGGACCAGGGCATCGATCCCAATAGCCCTCTCTTTCAGGCCATCCTGGACAACCCAGTGGTGCAGCTGGGTTTGACAAACCCTAAGACATTGCTAG
Seq A exon
GTATGTGTGTTTACTTAGGCTAGCTTGGGTGAGGAACACATGGCGGGTGGATTCCCTGCCACAAGACCGGTGCTAGTGAAATGGTTTGGGCACTAATACTGTGCCATGCAGGTTGGCTTATGCAAGGCATTGTAGCTGTGTTTCTGAAAGCCTGGGAGTCAGCTTCTGCCTTGATGGGATGAGCTTCTGCAGAGGGGGACTCGGAAGAGCAGAGCAGTGGCCTGTATGGGAAGAGGAGGCGAGGAGACAGTAGAGTTTGGATTTTGCTTATTATTTATAAGGAATTTCTTTGATAATTACTTTTTACTTGTGATATATCTTAAAAATCCACATAATGGGGCTAGCAAGATTAGTGGGTATTTGCTCACAAATCTGAGTTTGACCCCGGAAACCGCATGGTAAAAGGTGAGAGCTGATTTCTGCTTGCACACTGGCATGTGCATGCCCCCCAAGTAAATAAATAAATAAATGCTAAAAATATAAATAAAACCTAAGTCTGCCACTTTAAAAATAGGATGACAGTGTAGTGGGGCACCCCTTTAATCCCAGCACTCAGGAGACAGAGGCAGGCAGATCTCTGAGTTCGAGACTGGCATGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAACAAACAACAACAACAAAAAAAAAACTAAACCAAAAACTAAACAAACAAACAAAAAAACCCAAGAAAGTAATAGAACTAAATAGTTAGGAACATGTCATTCATTTGAAAACTGTTGTACTGGCCATGCCTATATCTCAGCACTTGGAAGGAGGAGGCAGGAGACTTGAGAGGTCTAGGCCAGCCTGGTAGCTTCTCCCCAGACAGCAGTCACCATCCGTGTCCACAGTACTGGTCTCAGGAGTGTGTGCAGACACTCGGGTGTTTCAATGGAACCTGGGGACTGCTGTGGCTTACACCTGCAGTCTCAGAGAACGACAGACTGTTTCCAGGTCAGCCTGAGCTAAGAGTAAGACGCTGTCTCAAAGAAACAGCAGAAAAACCATAGAATTGTTTATATTCTATAGATTCCTTCTGTCTTCTAATGTGACATCAATGCCAGGAGCATGGCTGTGATTCTGAACTGTTCAGGGGTGACAACAGGTTGTCTGTGTGTTTGTGTATATGCACTTTTTTCCCCTTGAAGTGTTTCGGGTTTTTGTTTTGTTTTGTTTTGTTTTGAGCCAGCTATGTGGCCTCTTGGATCAAGATGGGCCTCGCCTCAGTATTTTAGTCCTGTGAGTGCAGAAGTCTGATCCATCTAGTCCTACTCCTTCTGCACCCTCATATGCCCTTCCCGTACATCATCATCCCCTGCATACAAGTGTGACCACGGCCCCGAGGACTTGTCCTTCCTTGGCTTTCCTGTAGGGTTTGGCGACTCTTATACATATTTTCTGTCTGTCACTTGTCCCTGCCTTAAAAGGTGGCATCACCTTTTTAGGCCATTTCTGTAACTGACTGCCATATCTCCTGTGAGGTGTTGTAAACTATTCCACAGGTCAGGAGTGACTGTACCCTGCTGCCCAGTGGTATGTGGGTTTTTTCCTTGCGTGCAGAAACTCTTTCCTGTCCCTCAATGCAAATGGGCTCCTGTGCACTGGACTTCCAGGGCTCGGATGAGCACAAAGAGAAGGAATTGCTGCCTGGGCCTAAAGTGTCCTTGTGCTCTCTGGTCTAGATGGAGCTCAGCTGTGGGTACAGCACAGGGGCTTCCACCTGTTTCCATGTCGCTTCCTTCTACGTTCTTCCTAGGATGTACTGAAGAAGTCCTTCACACAGTCTGAACCCGGCTCTTTATAGATTACCGCGTGTTGTCCCATTTCTGGTTCCTATCAGGTGGCTTTTGGGAACTGAAGTCCTCTGATTCCTTGAACTTTTTTTTTTTTTATGGTCAGAAAAACATTTCTCTTAGGTTGTTGGAGAGTTTTGAAATTTCTTTAAGTCCATCATTTAGCTGAAAGTCTACATGCGTGCATGTGTGCAGGTGTGTGGCTATAGCATGTGCAGTATAAGCAACACAGTTGTCCATTATATATTTGAGGCTATGTTTGGTATTTTTCATTGTCTCTGATCTTTCACACTGAGAACATCCCTCCCTCTAACCCTTGTCAGGCTGTTTGTAGATCTTTTTTATTGTTGTTGTTGTTTTGGTTTTGATTTTGGTTTTTCAAGACAGAGTTTCTCCCTGTAGTTCTGGCTGTCCTGGGACTTACTCTGTAGACCAGTCTGGCTTTGAACTCAGAGAGGTCTGCCTCTGCTTCTAGGTGTTAGGATTAAAACTGTACTCCACCACCACTTGGTTTTTAAGAAATGTCTTACACTTCCACAATGCTGTTCATCACCAAAAGAAGTCGGGACTGGACCTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCCCTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAGGACTACCAGCCCAGGGATGGCACCACCCACAATGGGCCCTCCTGCCTGATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTATAAGAAATAAATAGGTGTTGCCTTGAGATCTGACCAAAGGACTTTTTTTTCTTTGTGCTGGGGTTTCGGCTCCGAGCATGCTAAGTACACACTCTATAGTCATAGGGCTTTCTTTTCATATGTCAGTGTGGACTTGGCTGTGTATTGGTCAGTGTGTTTTAAGGTGCATTTGGCCAGAGAAGAGAAGCTCTTCCTCCACTTTAGGTACTGGGTTTTACCTTCTTTAGACTGTCAGGTGTATCTTTAGCTAGTGCCAGCCCTTTCTCTTTTCTGAAATAAACCACCCCAAGTGAGCACACTTAGTCTGTGTGCTGGGGTCTGGGCCTGGAGGGCAGGATGGAGGTCTGTGGACTGCTCCTCAGAGCAGCAGCCTGCTCACAGGGCAGGGCGTCAGCACTCAGCATGACAGGACTGAGTTGGCAGTGGGCATTTGGCTCTCTGCCACATCTGCACTGCAGGGCTGATGCCAGTCCTACAGAACTCCTGTGAAGGTCCACACCATCAGGATGGCCAGCTTGTGCCGTCTCCTGCAGGGATAGATACCTCTCCCAAGGATGGCCAGCTTGTGCCATCTCCTGCAGGGATAGATACCTCTCCCAAGCTCTAATTAGATATTTTTGATGTTTACTAATAAAATAAAAACAACTACCCTGGGCTGGGGAGAAAGCTCAGTGAATAAAGATACTTGCCACCAAATGTGACAACTTCCTGGAACTCAGATGGGGGAGAACTAGCTTCTACAAACTGTCCCCTGACCTTCCTGAACAATGAGGTATCTCTTCCAATATATAAAGAAATAAACTTTAAAAATTAAGAAATCTCCAATCCCATGCCCTCTATGTTTTATCAGAAATATATTTATTTTAGCAAATTTGTCACCTTGAACCCCTTTCATGCGTGTATGTCATTCTGGTGCTTCTGTTTTTCAGAGACTTGCCATGTAGCCCTGGCTGGCCTCAATCCTGTGCTGTCCCCCCACCTAGCCTTCCCTGTGCCGGGTGTGTGCCTGCCTGGCTTCTGGGCATGTGGGTATCTGTGCTGTCCTGTAGCACTGCTTGTGTGACTCTGTTCTCACCATCTGAGACAGTGTTTGGTGAATGCATACCGTTGGTTCTATAGATGTACTGGGTTACTGTGACAACATGGTACCCTGGTTTTGGTCACTTGAATTCCTTTCTGTCTGGTTGTAGAAGGGCTTTTCTTGTGCCCTGTACTGTGAGTGCAGCTTGCGTTCCCAGGGGTAAGCAGCGTTGGATGAGCAGGTCAGAGGCTGGCACTGAGCTCTTGCTTACGCCCTGTCTGCATGTTCTCCATTCTCCTGCATTGCCACCAACCTTGAAACTTTCTCCTTCCACTGGCACGGCCTGATTGCTCAACCATCTGAGCACTGCATGTCAAGCGCTGTGGAATACTTTCTGTTGGGCTCTGCATCTTTTCTTTTCCCTTTGCACTGGGTATTATGGTCTGTTTTCCAGTCCTGACACTTATTTTAAAGCTTGTGAAGGTAAAGGACACCTGCCCATTGATGCTACCTTGTAGCAGGTTTTGGCTACTTTGTGGATTCTTCTTTCTACCACCCTTTCTCCACCCTTTCAACCTCTGACACTAGTTGGAGGAGAAAAAAAGAATAGAGGGGGAAGGGGGGACAGTATCGTTAGACTACTTTCGGCTGACTGGGGGTGTTGCGTTCCTTGGGGGCAAGTTTGATCTTTGTCCTCAAGATACCTAATTTCTTCTTATTATTTTGTCTTTGTGCTTGACTATTTAATAAACCACTACCAACAGCAACCAACCAGCCAACAACAATCCACTCCACCTCTTGGGGCTCTGGCATTTATACAGCCTCTGAAGAGGTCCCCAGAATTCCAAACATCACACAATCACAGAAACTGTCTGCTGCTGGCACAATCACAGACAGCTGCTGTGGGCAATCTGAAGCAGCCCCATTTCCCACACCTAAGATTAAAACAGAAACGTATTCCCATAATATTTTTGTGTTTTTTAAAGAAACCAAAGCTACTTGTTACTGTATTACCTGGTACAGATAATCCTGATGTGCCTTAATTTTCTAGGGTCACTGTGTGTAGTATACATGTGAACATGTGTCTGTGCCTCAGATGCCTTCCATGTCACTGTGTAGTGTACATGCGTATGTATTCTTACGTGTGCAGATGAACATGTGTCTGTGCTGTGAACATCAGAGGTCAACCATGGGTGTCATTCTACAGCTGCCCACCATGTTTCTTACATTATTTATTCGTGGGGGGAGGACATTCATCAGCATGTGGATGTCAAAGGACAATTTGCAAGAGTTGGGTTGTTTTTTTTTTCCTTCTACCTTGTATGTCCCAGGGATTGAACTCAGGTCATCAGACTTGGTGGCAAACTCCTTTACTTGTTAAGCCATTTTGCCAGCTCCCAAAGGTCCTTTGTTAACTTGGAAATTGCTGAGTAGGCTAGGCTGGCTAGCCATAAGCCTCCAGGCTGGCTGGCCATAAGCCCCATTGTCCTTCTGTCTCTACCTCCCCAGTGCTGGGATTACAAGCATGTGCTCTCATGCCCTGCTTTTTATATGAATACTGGAGATTAAGTCAGGTCCTTATTCTTACACGGCAAGTGCCTTTATCTGTTGAGCCATCTTCCCAGCCCTAATTTTGTGAAACTCTAGAAAATCAAAGTTTGCTAGGTAGTGGTGGTGGCGTACACCTTTAGTCCCAGCACTGTGGGAGGCAGAGGCAGATGGATGTCTGAGTTTGAGGCCAGCCTGATCTACAGATCAAGTTCTAGAACACCTAGGGCTACACAGAGAAACCTTGTCTTGAGAAACCAGGAAGAAAGAAAAGAAGAAAAGAAAAGGTTCTTATTTTTTAAAATACTCTGTGTGTGTGTGTATTTTTTTAGTGATGGACCTGGGGCCTGTTCATGCTGAGCAAATGATTACTATTGGGCTATACTCCAGCCTTGTTAGGGTTGAACATGTAGGTTTTTCCAGAAGGGTAGAATTAAATCTGCTGGTGGCACATGCAGTTAATCCCAGTACTTGGGAGGCAGAGGCAGGGGATTTCTTGAGTTCAAGGCCAGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAGTCTGTCTTGAAAGAAAGAAAAAAAATCTGCTAAAGCATATTTGTACCAAGGATTTTTCACATGGCTGTTTCCTGTGGTGTGTGGAAAGGGGTATTTGCAAACCTGACTTTTGGGTCTGCTGGTAGCTTTCCAGAGTTGGAATGCCATGAGTCCAGGCTGTTGACTACCCCACTTGTGGACTGTGATCTGGAATACTGTGAGCACACAGGCAGTCCATTGCTCTGTAAAAGATGTAAGCATGGGCAGCTGACCACCTTACCCTGCTGATGGCTCTGAGTTGGGGGTGCTGTGATCTCACAGGCAGTCTGCTTCCCTGCCAACAGCCTCTGAAGTCTTTTTGGTCAGTAGCTCAGGCACTATGGTTGGCTCGTAAGGGTGAGTGTCAGGGCCATTGAGAAAGGCTCAGTATGCTTGTTGGTGTTGGGTGCTACCACTCAGCTCTGTCGTCTTCCCACAG
Seq C2 exon
CATTTGAAGACATGCTGGAGAATCCGCTTAACAGCACCCAGTGGATGAACGACCCAGAGACGGGCCCGGTCATGCTGCAGATCTCTAGGATCTTCCAGACGCTGAATCGCACGTAGGTGGTACCTACTGTGCTCCTTGGCTGTGCAGTCTCAGCAGTCTGTGAGGCAGTGGGCACAGGGTTCAGCCGGGATCTTGCCTGGACCACAGCTTCTCGGACTCTCCTTTCCAGACCTAACAGCTTATCAACTTCTGCCACATGGCTTGAAAGTTGCAGTCCTAGCTTCTGACAGGTGTCTACAGAAAGTGGCTGTTGCATTGGGAAGGTGAATGATTGCTGCCCGTCCCTCCAGATACTCTGCTGGGCTCCTGAAGTGCTACTTGAATTGACCCTTAGGTGTTTGCTTGTGGAGCCCAATGTATTTAAAAGAAGGCATGTTCTGATCCAAAGTGTTATGTCAAGTGTGCTAATTTAACCAGACTGACTCACAGATGGCTTCTTTAATAAATAAACCCTTTTCCTATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036352:ENSMUST00000036509:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(8.1=6.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types