HsaINT0176132 @ hg19
Intron Retention
Gene
ENSG00000130560 | UBAC1
Description
UBA domain containing 1 [Source:HGNC Symbol;Acc:30221]
Coordinates
chr9:138824815-138830206:-
Coord C1 exon
chr9:138830068-138830206
Coord A exon
chr9:138825362-138830067
Coord C2 exon
chr9:138824815-138825361
Length
4706 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
TGGCTCTGTTTTCCCTGCAGCAT
3' ss Score
11.02
Exon sequences
Seq C1 exon
TGCGAGTGGCTGCTGGGGGACCGGAAGCCCTCTCCGGAGGAGCTGGACAAGGGCATCGACCCCGACAGTCCTCTCTTTCAGGCCATCCTGGATAACCCGGTGGTGCAGCTGGGCCTGACCAACCCGAAAACATTGCTAG
Seq A exon
GTATGTGCGCCTTCTTTATGCTAAGTCTCGGGTCGGGGAGGCTGGCTGGTTCCCTTGCAGGACAAATAGGTGCTGCGGAGGCGATACGGAGGATCCAGCGCTGAGGATCGCCGTGCGCTGGCAGCACGTCCTGCCATGCAGGTTGGCATCCTGCGGGTGTAGTCCCGCTACGTCACTGTGGGGCCCGCAGGTCAGGTTCTGATCGTGGTGTGACTGTCTCCTGCGCGATGACCCTGACATAGGCCTCAGAAAACCAGTGCCAGTGGCTTTCCGAGGGCCAGCGGGGTGGAGACTGCGCCAGCAGCTTAGGAACTCACGGGAGGACAAGGTGTGGTTTGGGCTTTTGCTCTTACTACTCGTCAGGGTCTTCGATGGCAATGGTTTATTTTTATTGTGAGATACGTACATACAAAAGTGTATATGATGATGTAACTTTAAAGAAGAATAAAACTAATAGCCATGTATCTACTATTCAGCTTTGGGCCTGGGGTGCCCCTCCCCTATGCACCTCATCCCTCCCTCCGGTGTGGCCGTCGCCGTGGCCGCGGCTTACCTCTCTGCTTCCCGGTAGAGTTTTGCCGTATTTGTGTCTCCTTAAACAATCTCTCATTTGCTGCTGCCTTTGTGTAAGTAGAATCATGTTTTAAGCAGGCCTCTGTGACTGACTGCGTTCTTTGTGGGGGTTGTGGAGTATTTTCTTGATGGAAGGCACTGGGAACCCAGGGCTCGTTGGGTTGTCTACATGTGGTGCCACTCCTGATTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCCTTGTCACCCAGGCTGGAGTGCAATGGCATGATCTCGGCCCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTACCTGGGATTACAGGCGTGCACTACCACGCCTGGCTAATTTTTCGTATTTTAGTAGAGACGGCTTTCACCATGTTTGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCACCTGCCTCAGCCTCCCTAAGTGCTGGGATTACAGACCTGTTGGTCCCCAGGAGCTGAGTTCCTGGATGTTGGGAGGGCCTTTGCCACCCGAGCAGGCTGGAAGTGTCTCTGGAGCTGCGATGGCCGTGCCCTGATCTTGAAGGCTGGCCTTCTTTCAGAAGCGTATTGGCCGCCTGTAGAACCTTGGCTGTGAGAGACCTTCCGCTCAGCGTTTGGCCTGCTTTTCTCTTGGATTGTTTTCTTATTCATTCAGAAAGGTCCTCACCTCCTGGATGCTGACCCTTTTCCCATTATTTGTGTTGCAGATGCCGTTGTTCAGTTTCTGGTTTATTTCCTCACACTGATGGGCAGAATCCCGTGTTTTGATGTCCTTCAGTGTGTCTGTATTTTTTTTAAGATGTGAACCTTTAAAGAAAACCCTCCATGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGAGGTCAGGAGTTCAAGACCAGCCTGGCCAAGATGGTGAAACGCTGTCTTTACTAAAAATACAAAAAATTAGTTGGGCATGGTGGTATGCACCTGTAATCCCAGCTACTCTGGAGCTGAGGCAGAGAATTGCTTAAACCTGGGGGGCGGAGGTTGCAGTGAGCCGAGATCGTGCCACTGCACTCTAGCCTGGGCGTCAGAGCAAGACTCCACCTCAAAAAAAAAAAAAAGAAAAAGGAAAACCCTCCTATCCGAAAGTCAGAAACACGTTTTCCTTTTATTTTTTTTTCCAAAAATGTTAAAAGTTTCTCTTAATTTAAGTCCATAATCTACCTAGAAGTATGTGTGTGGTGTGAGGTAGGGATCTTCTTTGTACCCAAATTCTAAAACTTGAGAATGGTCTTTTGTGAGTTTATTTTTATTCTTAGTGATTCCTTTCACACTGAAAGCATATTCCTCCTAGCTCTCCAGCTGTTTGTATACCTTAGGATGTTAGTGTGTGCTGCCTTGGGGTCTGTCCAATAACTTTTTCTTTTTTTTTTCCTAATAGAAATAGGCTCTTTCTCTGTCACCCAGGCTAGAGTGCAGTGATGGCGCCACTGTCCATGCAAGATCTGCCCCCAGCACACACACTTGCCCACCTCCATATTATAGACAAGACCTTCATTGTTTTAACTTGTATTCCTCTTTTTTTTTTTTTTTTTGAGATGGAATCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAAGCTCCGCCTACCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGCCACCGTGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCTACTGCGCCTGGCCACTTGCATTCCTTTTGGTTATTAGCAATGTTGAATACTTTTCTGTTGGCCATTGCATTTCTTCTTTTACATACTGTCTATGCGTGTCATCTATTTGTTTTCCTTCTTTTTATGGAGACAGGGTCTTGATCTGTCACCCAGGCTGGAGTGCAGTGGTACAATCACAGCTTACTGCAGCCTTGACCTCCTGGGCTCAAGTCATCCTCATGGGTAGTTATGACTACAGGCATGCACGACCATGCCCAGCTATTTTTTTTGTTGTTGTTGAGATGGGGTCTCGTTTTTTTGCTCAGGCTAGTCTTGAACTCCTGGCTTCAAGCGCTCCCCCCACCTCTGCCTTCTAGAGTGCTGGGATTGTAGGCGAGAGCCATTGTGCCTGGCACATGTGTTTTTCAATTGCAATATTAATCCTAGAGCTTCCTTAATAGCTTCTTGGATATTAGGCACATCTTCCTTTGTTGAATGTTGTAAACTGTTTTTGCTCTCTAATTTTGTGTGGCATTTTCTGACATACAGAAGTTAGGATATACAGAAGACAGTCCTTCCTCAGGTTGGGCATGGTGGCTCATGCCTGTAATTGTAGCACTTTGGGAGGTTGAGGCAAGAGGATCACTTGAGCTCAGGAGTTCGAGACCAGCCTGGGTAACATAGCAGGACCTCCTCTCTACTAAAAAAGCAAACAAACAAAAAAACAAAATCAGCCAGGAGTGGTGGCACACGTACCTGTAGTCCCTGCTACTCAGGGGACTGAGGTGGGAGGATCATTGAGTCTGGGAGTTCAAGGCTGCAGTGAGCCATGATCACTCCACTGCACTCCAGCCTGGGCAACAAAGCAAGTCGCTGTCTCAAAAAAAAATTAAATTCAAAAAGGAAAGTCCTTCCTCAGATAAATAATCATCTGTGTGGTTTTTCATATTTAACTCTTTATCTTTTTGTTCAACTCTTTCATCCTTCCAGAATTTATTTTGCTGTTTATTGAGAGGAAATGGGAAATTAAGTTCCCCGCCCTGTGTGTGAAACAGCTGTTTCGCACCTTATAGTTTGTTCTTTCTGAGTCTTTTTCTGGGATTTTTATTTTTATTTTTTGAGACGGAGTCTCACTCTGCTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCCAGCTCCGCCTCCCTGGTTCATGCTATTCTCCTGCCTCAGCCTTCCGAGTAGCTGGGATTATAGGCGCCTGCCACCACGCCCAGCTAATTTTTTATATTTTTAGTAGAGACAGGGTTTTACCGTATTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATCCGCCTGCTTCGGCCTCCCAAAGTGTTGGAATTACAGGCATGAGCCACCGTGCCTGGCTTTTTCTGAGATTTTAAAGTGGTTTTTGGAGACTTTTAATCAGAACACCAGAGGATTGTTTTAAGGCCTGGGGATTGTCCAATCATGAACAGAGCCAAGTTGGGTTCACTCTGAGCTCTGTGCTCAGCCATGGGCTACTGGGCCGTGAATGGCTGTGAATTCTGTAGTGAGCACTGTCCCTGGAGCCTGTAGACCTGGGGCCACTTATGCTGAAGTGCGTCCATGTGTGTCAGGTCAGCATGGAGCCATCGATCCTGGCAGAGGGGCTGGCAGAACGCGTGCTCCTTCACAGTGGGTGGAACAGAGAGCTTTTTGCTAAAAGCCACCTGTTTTGGGGAAACAGTTTTGTAAAGCTGTTAAAACCCAAGTTTTCATTTTGAAGAAGTGCTGTGTTGCATTTTTAATGTGCTGGTTTTTTGAAGAAGGAATTTTCTGAAGGCTGAGCATTACGTTTTTCCAGTTTGTTGTTAACTTTGCAACAGTGTCTGTGTGTGTCCTTTCTGCATCTGCTGACCTTCTCGGGGTGGGATTGGAAGTGGAGTTGTTGGGGAAGATGATTTTTGAGCCCTGGCGGCTGCCAGACAGCTGCCGAGAGTGGGGGTGCCATGAGCACGCACAGGCACACTGCCCACCTGCCAGAATTGAGTGCATGACTCTCTGTGATCAGATCTGATTTGATGGGTGCATCCGATGGAGTTGGGTGGGTTTCAGCCTGAGAGTGCACACTTAGCAGTGAGCTCTGTGTGGCCTTTGTATTGGAGACGCACCCTCTTCATTAGGAAGCTGCCGAAGAGGAAAGTCACGCCTGTGCCTGTGGGCTGAGTGGGGGCGTGGGCACTCAGGCTGGCTCTGTTTTCCCTGCAG
Seq C2 exon
CATTTGAAGACATGCTGGAGAACCCACTGAACAGCACCCAGTGGATGAATGATCCAGAAACGGGGCCTGTCATGCTGCAGATCTCTAGAATCTTCCAGACACTAAATCGCACGTAGGTGGCGTTGTTCCACTCGGCTATCAGGCCACAGCAGCCCCCTGGTGCGGCCCGAGACCGGGCAGAGTGGACCTCACCTGGAAACTCACCTTCAGCGCCTCAGCCCTGGACTGTTAGAGGTGCTGCAGCTGCTCCTGCTCTCTGATCTTATTGCTTATAAACTTTGGTGACGGTAGTGTGTAAGGCCGTATTTTTAGCATCTGACAGGTGTTTACAAAAAAGTGGTTGTCGCACTGGGAAGTGGAGTGATGGCCTCGTCTCCAGTGCTCCTCTGGGCTCTTGAGTTGCTGCTTGAATTGCCGTGTAGACATTTGCTTGGAGAGTCCACTTGTTATTTGACGGAGGTAGGTTTCAACCCAGAGTTAATGTCAAGCATGCTAATTTAACTAGTCACTCACAGATGACTTTTCTTTAATAAAGTCCCTTTTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130560-UBAC1:NM_016172:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.263
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(8.1=6.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)