GgaINT1029073 @ galGal4
Intron Retention
Gene
ENSGALG00000001713 | UBAC1
Description
ubiquitin-associated domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026645]
Coordinates
chr17:8167286-8170074:+
Coord C1 exon
chr17:8167286-8167424
Coord A exon
chr17:8167425-8169680
Coord C2 exon
chr17:8169681-8170074
Length
2256 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CGATTTCCTTCTCTTGGCAGCCT
3' ss Score
8.09
Exon sequences
Seq C1 exon
TGTGAATGGCTGCTGGGAGACAGAAAGCCTTCTCCAGAGGACTTAGATAAGGGAATTGACACAAACAGCCCTCTCTTCCAAGCCATCTTAGAAAACCCAGTAGTACAGTTAGGGTTAACCAACCCTAAAACTCTACTAG
Seq A exon
GTAAGTCCTGATTGGGTTCCCGCTAAATATATTCCATCTCTGACATTCCTAACAAATAAGAACAGAGACAGGATGTTAACAACACATACTATGAAGTGAGTGCAGCGCTGTACCTTTTTTCTGACTATCAGCAGCTTATTTCATTTTGCAACTCAGCTATAACCTGAACAGAGCTTGGGATGTCCCAGAAATGATGCTAATTTCTTAGGCTACTGATTCATACTTGCTGAACTCAGAACTTTAATAGCTGCTGGCTGCAATGCTTTTGTGGTTTTAGGAGACCTTTTGTGTGCTCCCTTTGGCCGTGAAAAACAAAAAAAAAAGGAATGTCTATTTAGAACCCTGATGACTTTACAGAAAAATCAAGGCTGTCTCCTGCTGTACAGCTTACTGTGTGTTTTGCTTAGATCACTGGAATGGAAGATAATTGGTGTAACCAAACAAGAAGTCAGAGCTAAGGCTTTGCCTATCAAAATTCAGATAGCGCTTGTGAAAATGTTTTCCCCTTCTTGAGTATATGTGATAAAGTCTGTGTTCTTGTTCAAAAATGCTGTGAGCACAGCAAGCACTCAACTGATAAAACCGATGGTGAAATGCAGATCTCTTATGCATTGGCCTCTGGTGCTGGAGGACAATGTGGAAGAATGACAATAACTGCGTTGTATATGTAAAATTTTGCATTTAGTGTTTGGCTTCAGACTTTATTCAAAACTTTGAAATACTTTGGCATGAAGGGTGTATACATGGCTTTTTCAGGAGAGCTTTTTAAGATGCTACTTTAAATGTAATTAGGAGTGTTTGCAAGACTTTAAATAATTCAAGAGCAGAACCTTCCCACTCTCATTTCTGAACAAATGGTCTCCTTATTTCCAAAGACAGTTTCACACTGCAGCTCAGAGTATAAATAGAAAACGAAATGTCATTATATGTGCTTGTAAAGCTTGGATGAGCACCAGAGAATATATTCGTAATGATACATAAGCAAATTGCTTATGTCATAGATTTTAACAATAAATGTTTGTATTTAATTAGATACCTAAGGAATGTTGATAAATGTTTAGTTCTAAGCTCTTGAGTCTGTGTAAAAGAAGACAGTTGAAGTGGTGGAAGGTGAGATCTGTACGTTATTCTGGGCTTTGCTGCAAGCACGCAGCGTGACCTTGTGCAAGGTGTTAATGATGAGCCTTTCAGAGGTGCTGGGTGCTTATGGCTCCCACGAAGGTCACTTAGAGCTTTGTACACTAACACTCCTGGAAAGGTTCTGGCTGGCACCCTGTTGCTGGACTGCCAGACTCTTCTAACACTGACCTTTTGGTGACTTCTGAATAGGTCAGATATGCAACTGCTTTTTTTCTGTCCTGTTCCGTAATGACCGCTCCAAATGTCCACTAGTGTGGCACAGTGTCTGTCATAGAGGTTGTGAATTACTGCCTGGATCATTCTTTTGCCAAATTTGTGACTTAGCTCTTGCAGTAAATGTCTAGTTCCTTCAAAATAAAGAGAAAAGGGGAAACTAGCATGTAAAAAAGAAAACAAAGCCAAACTAACTTAGTGTAAAGACAGCTGTGCATAGAAAGAAATTAAAAAAAATTCTTCTGCCCAAATGTCCCCATTCTAAGATGGATATTCAGAACCCAATTGATTGGTGTGTTAACTGCTACTGCAGCCAGTGTGGATGTAAACAGAGAAAACCTTCCCAGCCCTCTGTGAATATAGTACTGGAGGCTACTCAGTCTCCTCAGTATCAGTGGCCAGAAGAAGCCACTCTGCAAACTCGGAAGAGCGCTATGCCTAAGGAGTGACTGAGGCACAGTCTCTGACATGTAGGCAGCAACCTCCATTTCTCCTGGGCTGTGTCAGTCTGAAGAACGTTATTACACTGAGTGCAAAACTGCTCTGTAATGGAAAAGTTCTGTCTGTAGACTTTTGCAGAGTGTTTAGCTCTTCAAACCCATGTCACTGAGATTATGTAAGATGGACTGTAATCCAGACTGAGTATTTAATCAGCCTCTGCCTGTGATAAATTTAATGCTGAGCAGTGAGGAAAGCGTAACAGCATGTAGCACCCCAATCTGGAGATGTAGGAGAACAAATGGTAACCGTGTGATGGATTCTCACCGTTTTGAGGGGCTGCTTGCCCACTGCCTTGGATAAACTGTAAGTATTTCTAACTTTCCTGTTGTTGAAGCATCCCAAACACTGAAGCGTGTGCTGCTAAAAGACCAATAATGTACAACGATTTCCTTCTCTTGGCAG
Seq C2 exon
CCTTCGAAGATATGCTTGAAAACCCCTTGAACAGCACTCAGTGGATGAATGATCCAGAAACTGGGCCTGTCATGCTACAGATCTCTCGAATCTTCCAGACACTGAATCGCACATAGAGGGGAATGCCAGACCACTGTGCCACTTCCTGCTGTCCCTTGTGTCACCTTCTCAATGGGGAGGGTGCATGGATTGTTTGGGGAGGGGGGAGGGATGCTGTCTGAGTAGGGGTCTCATGTGAGAGCTTATGTAGTTATGGCCAACTGAAGTTAATTGCCTTGTGAATTTAGTGTTAGTGGAAGAGGTTTGAAGACTTGTATATGTTTTCAGGTGTTAGGTTAAAAATAAAGTATATCAAAAAATAGGAAAAGGTTTTGTGAAAACAATTAAGAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001713:ENSGALT00000002629:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=0.289
Domain overlap (PFAM):
C1:
PF0062726=UBA=PD(8.1=6.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]