BtaINT0156630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020296 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:26519709-26520460:-
Coord C1 exon
chr2:26520317-26520460
Coord A exon
chr2:26519759-26520316
Coord C2 exon
chr2:26519709-26519758
Length
558 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
CTTTTTTCTCCTTTCCAAAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTCTTGGAGAAAATGCTTGTGCAAGGAAGAGTCATGAAAAATACCTTATAGCTTTGAAGAGCTCTGGACTTACATATCCTGAGGATAAACTTGTATACGGTATACAAGAGCCATCTGCTGGCGCTAGCACTCTGGCAGTTCAAG
Seq A exon
GTTTGTTTAAATATTTAATTTGAACAATGGTAACTTTTCTGTATTAAAACAAGAAATCCCTCAAGCTTTACTCATTGAAAAAATTTAAGCGCTGTGTCATTTTTTGTAAGGAAAGTAATAAAAGTAGTAAAAATTTGTAAGCAAGAAAGGATAGATTAGTCAAAGAAGATACTTTGTTTTTCTTCAAAGGGATTCAGTTAGTTTATCAAAGGTTCTAGTTTGAACTCATGAAAAATATAGCACTTGCTATTTAGGAGTACCCCAAAACTTTAGTAGTTCAATATTTTAGTAAACCATGGTTTAAAAAGAAAAGAAAGCAATCCTTCTGAAACATTATTTGTCAGTATTAAATCTGTGTTTTCACTGGAGGTTTCCTATTGAAATATAAACTGATTGGGCCCAGATTTAAAGATAAATGTTAAATTCCGCCAAGATAACTATTAGAATGAGTTGTCTTAACAGAACTTTAGCTTTTGATATTGTTATGTTTTAAAGTAATTTTAAGGTTAAAGCAATATGTAACAGTTATGAAGGGAAACTTTTTTCTCCTTTCCAAAG
Seq C2 exon
GTTTTGCAAGTGCAGCAGGAACATTGGGACAACTAGATTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020296:ENSBTAT00000061386:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.294
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGGAGAAAATGCTTGTGC
R:
TCATCTGAAGAATCTAGTTGTCCCA
Band lengths:
193-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]