HsaINT0176835 @ hg38
Intron Retention
Gene
ENSG00000144357 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr2:169877494-169878574:+
Coord C1 exon
chr2:169877494-169877637
Coord A exon
chr2:169877638-169878524
Coord C2 exon
chr2:169878525-169878574
Length
887 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
ATTTTTCTTCTCCTCCAAAGGTT
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTTGGAGAAAATGCTTGTGTAAAGAAAAGTCATGAAAAGTACCTTATAGCTTTAAAGAGCTCTGGACTTACATATCCTGAGGATAAGCTTGTATATGGTGTGCAGGAGCCATCTGCTGGTACTAGTTCTCTGGCTGTTCAAG
Seq A exon
GTTTGTCTAAATATTTAATTTGAACAGTTGTAACTTTTCTGTATTAAAACCAAAAAAACCTCTCAAACTTTACTCATTATTGAAAAAAATTATTTTGAACTAAAACAGTATTATTCTTTTTAAGAAAAGTAATAAAAGTAGTAAAAATTTAGAGGCAAAAAAGAATAGATTGACCAAAGAAGAGAATGCATTTTTCTTAAATGGAATTTGATTAGCTTATTAAGGTTCTGGTTCTAACTCATGAAAAATGTACAGTTGCTATTCAAGAGTAGCCCAAAACTTTACTGCCTCAATATTTTAGTAAACTATGGTTTAAAACTAAAAAGAGATCCTTCTGAAACACCATTTGTAATAACTGTATTAAATCTGAGTTTTCACTGGAGAATTCCTATTGAAGTATCAACCTATTAGGTCCAAACTTATTTGAGATAAATGTTGGAGGCTGGGCACGGAGGCTTATGCCTATAAATCCCAGCAGTTTGGGAGGCCGAGGTGGGTGGATCACCTGAGGTCGGGAGTTTTGAGGCCAAAATGGCCAACATGGTGAAACCTCGTCTTTACTAAAATACAAAAATTAGCTGGGCGTGCTGGCAGGCGCCTGTAAGCCCAGCTACTTGGGAAGCTGAGGCAGGAGAATTGCTTGAATCTGAGAAGTGGAGGTTGCAGTGAGGTGAGATTGCGCCACTGCACTCCAGCCTGAGCAACAGAGCGAGAATCCCGTCTCAAAAAAAAAAAAAAAAGTTGGACTTTGCCAAGATAACTGTTAGAATGAGGTGTCCTAACGTAACAAAACTTAGCTTTTTGATATTTGTATTTCTCAGAATAATTTGAAAATAAAGCAATATGTAGCAACTATGAAGGACAACTATTTTTCTTCTCCTCCAAAG
Seq C2 exon
GTTTCATAGGCGCAACAGGAACTTTGGGACAAGTGGATTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144357:ENST00000272793:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.271
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGGAGAAAATGCTTGTGT
R:
TCTGAAGAATCCACTTGTCCCA
Band lengths:
190-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains