GgaINT1029155 @ galGal4
Intron Retention
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18054548-18055325:-
Coord C1 exon
chr7:18055182-18055325
Coord A exon
chr7:18054598-18055181
Coord C2 exon
chr7:18054548-18054597
Length
584 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
GAATTTTCTTATTTCAAAAGGTT
3' ss Score
6.5
Exon sequences
Seq C1 exon
GTGTTGGAGAGAATGCATGTGCGAAGAAAAGTCATGAGAAGTACCTCATTGCTTTGAAAGGCTCAGGACTGGCATTTCCTGAGGATAAACTTGCATGTGGTATGGAGGAGCAAGGAGCTGGTACTAGCACACTAGCCGTTCAAG
Seq A exon
GTTTGTGCAGAAAAATATTTTTAAGAGAGGTGTTGTTTATTGCTGTTTATTTAAAAAGTTATATTTTTAACAGGCAAGCTTCAGTAAATCTTAATGAAAATTATTTAGTGCAGCACCAAAGTGCAGGACTTGATTCTATCAACAACACTGAGCTTGTTCTCTTTTTGCTGCTAAAATACTAAGCGTCATTTTCCTGTCATAGAATTAGTGGAATTTGTGTAGGCAAGGTGAAGTTGATTATGGTGGAATTTTATCACTGCAGCTAAGTTAATTCACCTTCTCACAGCTCTTAAGAAAGAACGTTGTTGATCAGTAAGGACTGTTGTAGATTTTTGCAATTTGTGAAAGAGCTTGTTTCTGTTTAGTACGGTACATTGAACTTGTGCAATGTATTTGGAAATCCAAAATTTTGTATTCTTAGTATTGCTTGGAAATCTTTCTCCATCTTCTCAGTGGAGCGCTTTGCATTCTTCTTAGAAATTTAATGTAGTTTATTCGTTTCATACTGGTTCATTAAATATCGTAAAATATTCTTCCAGTATAAGACTTATGAAAGGAATCTCTGAATTTTCTTATTTCAAAAG
Seq C2 exon
GTTTAGCAGGTGCTACAGCAACATCAGGACAAGGAGATTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGAGAATGCATGTGCGA
R:
TCATCTGAAGAATCTCCTTGTCCTG
Band lengths:
190-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]