BtaINT0157544 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39691653-39692612:+
Coord C1 exon
chr7:39691653-39691831
Coord A exon
chr7:39691832-39692071
Coord C2 exon
chr7:39692072-39692612
Length
240 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CACTCCCCTCCCTTCTGCAGCCA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GACACGAGATTCTCTGAGCTGCTGGTCCTGGAGAGTGAAGGGGGGGTCCCAGCCCTAGTGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAGAAGATCATTACCAGCCTGGACCCGCCCTGCAGTCGGGGTGCCGACTGGCGGACTCTAGCCCAGAAACTCCACCTGGACAG
Seq A exon
GTGGGTGGGAGGTGGGCAGGGAGGGGATATGAAGGCCACCTGCAGCCCAGCTTGGGCGGGGATGAGAAGCAGCGGGGGTGGGTGGACAAGACACATGGTGGGGCCTGTGGTCCAGCCCCAGCAGCTGGGGCTTCCCCTTGGCTGACCGAAGGGAGGCCCTGTCCTCAGGTGGTCTAGGAGGGTGGAGGCGGCAGCCCCTGGTGAGGCCAGGCTGCTGAAGCACTCCCCTCCCTTCTGCAG
Seq C2 exon
CCATCTCAGCTTCTTTGCCTCCAAGCCCAGCCCCACAGCCATGATCCTCAACCTGTGGGAGGCACGGCACTTCCCCAACGGCAACCTCAGCCAGCTGGCAGCAGCAGTGGCCGGACTGGGCCAGCCAGATGCCGGTCTCTTCACAGTGTCAGAGGCCGAGTGCTGAGGCCGGCGAGGCCCACAATGCCTACACTCTCACCAGCTTTGGCGCCCGCCAGGAACAGGCAGAAGCCAAGACAAGGCCCTTCCCCACCACCGGGGAGAGCTGCGCGGACAGGCCCCCTCCTGGCGGACGCTGTCCCCTATCACTGGCCCTTTCAGACCCTGCCCGCACTCCCTCCCCTCCATGGCCTGCCCGGCCAGGCTGGCACTGCCACCTGCTCTCACTCTGCCCAGGCCCCCAGGTCCCAGGGTGGATGGCGCCTGGAGCCCAGGCTGGGCCCAGCCCACTGGTGTGTGTGTCTGTGCGTGTGATGTTACCTCTCCTCCTGCCCCGGCCAGGGGGCCGCATACACACGGGCAGGCACGCATGCCATGGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(36.0=45.0)
A:
NA
C2:
PF0053117=Death=PD(62.7=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCAAGATCCCCTTCCT
R:
GAGAGTGTAGGCATTGTGGGC
Band lengths:
308-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]