GgaINT1029322 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9652962-9653746:-
Coord C1 exon
chr13:9653568-9653746
Coord A exon
chr13:9653436-9653567
Coord C2 exon
chr13:9652962-9653435
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
GCCACCTCTCTGCCCCACAGCCA
3' ss Score
8.48
Exon sequences
Seq C1 exon
GACACGAGGTTTTCGGACTGGCTGGTCCCTGACAGCGAGGTGGGCTCCCCGGCCCTGGTGGGTCCCAGTGCCTTCAAGATCCCCTTCCTCATCCGCCAGAAGATCATCAGCAGCCTGGACACGCCGTGCGCCCGCGGGGCCGACTGGAGGACGCTCGCCCAGAAACTCAACCTTGACAG
Seq A exon
GTGGGATGGGTTCAGAGATGGGGAGGGGACGTCTGCCCTCATCCTGCGCTCCGATACCCACGAGAATGGGGCGGTGCCGACGGCGGGGCCATCCCCATCCCCGCACCCCAATGCCACCTCTCTGCCCCACAG
Seq C2 exon
CCATGTCAGCTTCTACGCCTCCAAGCCCAGCCCCACGGCCATGATCCTCAACCTGTGGGAGGCCCGACACTTCCCCAACGGCAACCTCTCGCAGCTGGCCGCCGCCGTGGCCGAGGTGGGCAAGCAGGACAGTGCCCTCTTCGCCGTGTCCGAAGCCGAATGCTGAGCTCCTGGGCTCCGTGGGGCAGGGTGGGGGCCCCGGCCGGCCCCTGGGCCCCACTGCTGCCCCACAGCCCCCGGCCTGTGCCCCCGTGGCGCTGGGGGGCCGGGCGGGGGGCCGTGTGTGCGTGGTGCGTGCGGTGCCGTCGTGCTGTCTGCGCTTGGGGCCGGGCGGCCCTGGGCCCCGTGCCGTGTTGTGTAAAGACCGTTTTTTTAATTCTGTATTAAGTGCATTCAAGTATTTACACTTGGCCTTATGTACATAGCGGTGCCGCGGGGCGGGGGGGTCTGGCGGACGTGAATGTAAATAAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(34.2=45.0)
A:
NA
C2:
PF0053117=Death=PD(64.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCAAGATCCCCTTCCT
R:
GAAGAGGGCACTGTCCTGCTT
Band lengths:
253-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]