HsaINT0177851 @ hg38
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr5:176879310-176880895:+
Coord C1 exon
chr5:176879310-176879488
Coord A exon
chr5:176879489-176879720
Coord C2 exon
chr5:176879721-176880895
Length
232 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GGCCCCCCTCCCCTCCACAGCCA
3' ss Score
9.34
Exon sequences
Seq C1 exon
GACACAAGGTTTGCTGAGCTGCTGGCTCTGGAGAGTGAAGCGGGGGTCCCAGCCCTGGTGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAGAAGATAATTTCCAGCCTGGACCCACCCTGTAGGCGGGGTGCCGACTGGCGGACTCTGGCCCAGAAACTCCACCTGGACAG
Seq A exon
GTGGGCGGGAGAGGGGCAGAGAGGGCCTGCGCAGGCCACCGACAGTCCTGCCCGGCGGCGGGGTGGGTGAGGTGGACAGGAGGCCCTGTGGGGCCTGTGCCGCATCTACTAGTGGCCGGGGCAGTCATTGTGTTTGGCTTCGGGGAGGCCCTGCCCTGGGGTGGGCCAGGGGGGGCAGGAGGTGTCGGCTGGGGCCAGGCCAGGCTGCTGACGGCCCCCCTCCCCTCCACAG
Seq C2 exon
CCATCTCAGCTTCTTTGCCTCCAAGCCCAGCCCCACAGCCATGATCCTCAACCTGTGGGAGGCGCGGCACTTCCCCAACGGCAACCTCAGCCAGCTGGCTGCAGCAGTGGCTGGACTGGGCCAGCCAGACGCTGGCCTCTTCACAGTGTCGGAGGCTGAGTGCTGAGGCCGGCCAGGCCCGACACCTACACTCTCACCAGCTTTGGCACCCACCAAGGACAGGCAGAAGCCGGACAGGGGCCCTTCCCCACACCGGGGAGAGCTGCTCGGACAGGCCCCCTCCCGGCCGAAGCTGTCCCTTAATGCTGGTCCTTCAGACCCTGCCCGAACTCCCACCTCTCCATGGCCTGCCTAGCCAGGCTGGCACTGCCACTCACACTCGGCCCCAGGGCCCAGGAGGGACAGTGCCTGGAGCCTGGGCCAGGCCCAGCCCATCTGTGTGTGTGTATGTGCGTGTGATGCTACCTCTCCTCCCGTCCCTCTCCAGGGGCCCCGCATACACACGGCCATGCACGCACACACTGGGCCTGGGCCAGGGCCCCAGAGCTCCTGCCTGAGCTGGACCTTATGCAAACATTTCTGTGCCTGCTGGGTAGGGGCACGTCTGAGGGGCCCTGCTCCAAGCCTGCAGGACCGAGGGCCACAGCCGGACAGGGGGTAGCCCCTGGATTCAGGCACACGACCACCACACGAGCACGTGCCACGCATGCCTCGTGTGCTCATCTCACACACACCCCCCTCCCGGGTCACGCAGACACCCCCCAACCACACACATCTCATGCTGTACACCTGAGGCTGCTCACGTCTCACGCCCAGTGTTGGTGCACATTTGCCTCTCACATGCTGCCCTCTCCACCCACCCAGGGACACCCCACGGCTCCTCCCTGCCCCTGCCCCTCCCCCAGCCTTGAGGTGCCCTGCCCGGCGGGGCCTGTGAATATGCAATGGGAGTCCCAGGCTGTACAGTGGTGAGTGTGTGTGTGGCGTGGCGTGCCCGTCCCCAGGGCTGGCTGGTGCCCCACGCGGGGCCTGTCATGTGAAGCTCGTGTCCTGACTTTGTCTTAAGTGCATTCACGCACTTACTCTTGGCCTTATGTACACAGCCTTGCCCGGCCGCCGGGGCACATAGGGGTTTTATCGGGCGTGAATGTAAATAAATTATATATATATATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763:ENST00000329542:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(36.0=45.0)
A:
NA
C2:
PF0053117=Death=PD(62.7=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTCATTCGGCAGAAG
R:
TGGTGAGAGTGTAGGTGTCGG
Band lengths:
297-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains