HsaINT0177851 @ hg19
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:12567]
Coordinates
chr5:176306311-176307899:+
Coord C1 exon
chr5:176306311-176306489
Coord A exon
chr5:176306490-176306721
Coord C2 exon
chr5:176306722-176307899
Length
232 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GGCCCCCCTCCCCTCCACAGCCA
3' ss Score
9.34
Exon sequences
Seq C1 exon
GACACAAGGTTTGCTGAGCTGCTGGCTCTGGAGAGTGAAGCGGGGGTCCCAGCCCTGGTGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAGAAGATAATTTCCAGCCTGGACCCACCCTGTAGGCGGGGTGCCGACTGGCGGACTCTGGCCCAGAAACTCCACCTGGACAG
Seq A exon
GTGGGCGGGAGAGGGGCAGAGAGGGCCTGCGCAGGCCACCGACAGTCCTGCCCGGCGGCGGGGTGGGTGAGGTGGACAGGAGGCCCTGTGGGGCCTGTGCCGCATCTACTAGTGGCCGGGGCAGTCATTGTGTTTGGCTTCGGGGAGGCCCTGCCCTGGGGTGGGCCAGGGGGGGCAGGAGGTGTCGGCTGGGGCCAGGCCAGGCTGCTGACGGCCCCCCTCCCCTCCACAG
Seq C2 exon
CCATCTCAGCTTCTTTGCCTCCAAGCCCAGCCCCACAGCCATGATCCTCAACCTGTGGGAGGCGCGGCACTTCCCCAACGGCAACCTCAGCCAGCTGGCTGCAGCAGTGGCTGGACTGGGCCAGCCAGACGCTGGCCTCTTCACAGTGTCGGAGGCTGAGTGCTGAGGCCGGCCAGGCCCGACACCTACACTCTCACCAGCTTTGGCACCCACCAAGGACAGGCAGAAGCCGGACAGGGGCCCTTCCCCACACCGGGGAGAGCTGCTCGGACAGGCCCCCTCCCGGCCGAAGCTGTCCCTTAATGCTGGTCCTTCAGACCCTGCCCGAACTCCCACCTCTCCATGGCCTGCCTAGCCAGGCTGGCACTGCCACTCACACTCGGCCCCAGGGCCCAGGAGGGACAGTGCCTGGAGCCTGGGCCAGGCCCAGCCCATCTGTGTGTGTGTATGTGCGTGTGATGCTACCTCTCCTCCCGTCCCTCTCCAGGGGCCCCGCATACACACGGCCATGCACGCACACACTGGGCCTGGGCCAGGGCCCCAGAGCTCCTGCCTGAGCTGGACCTTATGCAAACATTTCTGTGCCTGCTGGGTAGGGGCACGTCTGAGGGGCCCTGCTCCAAGCCTGCAGGACCGAGGGCCACAGCCGGACAGGGGGTAGCCCCTGGATTCAGGCACACGACCACCACACGAGCACGTGCCACGCATGCCTCGTGTGCTCATCTCACACACACCCCCCTCCCGGGTCACGCAGACACCCCCCAACCACACACATCTCATGCTGTACACCTGAGGCTGCTCACGTCTCACGCCCAGTGTTGGTGCACATTTGCCTCTCACATGCTGCCCTCTCCACCCACCCAGGGACACCCCACGGCTCCTCCCTGCCCCTGCCCCTCCCCCAGCCTTGAGGTGCCCTGCCCGGCGGGGCCTGTGAATATGCAATGGGAGTCCCAGGCTGTACAGTGGTGAGTGTGTGTGTGGCGTGGCGTGCCCGTCCCCAGGGCTGGCTGGTGCCCCACGCGGGGCCTGTCATGTGAAGCTCGTGTCCTGACTTTGTCTTAAGTGCATTCACGCACTTACTCTTGGCCTTATGTACACAGCCTTGCCCGGCCGCCGGGGCACATAGGGGTTTTATCGGGCGTGAATGTAAATAAATTATATATATATATTGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763-UNC5A:NM_133369:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(36.0=45.0)
A:
NA
C2:
PF0053117=Death=PD(62.7=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCTCATTCGGCAGAAG
R:
TGGTGAGAGTGTAGGTGTCGG
Band lengths:
297-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)