DreINT0171859 @ danRer10
Intron Retention
Gene
ENSDARG00000033327 | unc5b
Description
unc-5 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041213-1]
Coordinates
chr13:29089753-29093582:+
Coord C1 exon
chr13:29089753-29089931
Coord A exon
chr13:29089932-29093416
Coord C2 exon
chr13:29093417-29093582
Length
3485 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
TCTCCACATCTGTCCCTCAGATA
3' ss Score
9.47
Exon sequences
Seq C1 exon
ACTTTGCCGCCCCATTCACCATTGCCAGCAGGCGGTTCATGTCTGCCTTCGTCTCAAGTGGGCCCATATGCTTTCAGGCTGCCCGTCTCCATACGCCAGAAAATTTGTGCCAGTCTGGATGCCCCCAGTGCTCGTGGCTGTGACTGGAGAATGCTGGCTCGCAGCCTGGCCTTCGACAG
Seq A exon
GTATATTTTTGGATGCACTAGGAATGGGCAATAGGCAATTCTCCCCACGATAAGAATGAGTCCTCCAATGATAATAACAATGAAACCTATTTTCTGATAGTCTCTACAATCTGGAAGGTGTTTGGTCAGGGCTGTTGAGTGTGACAGTGTGCAGTGAATAAAATTTACTACACCAGCATGTGTTCCATACAGTTTAGGAGCCTGTTTACAATCAAAATAATTTACTGACATGCTTTTACTCCATATTCACTTTGTAACATCAGTCAAGTCTTTGAAAAAGTCTCGAAATCTTTATGAATCTTTTGTTTCAAATCAAGGGTTCGAAGTGTATATCAAATTGCCAAGGTCACATGATTTGAGTAAACTGCTTTGAAATGCATAGAAAACTCAGTGGTTCTCCACTTGGGGTGATCTCAAAATTCCACCTAAAGCCACAGTCATGCTACATTTTTTGTCCAATTGACTTGCACTCACTCCCTAACTTACTCACTCACTCACTCACTCACTCACTCCTTGTTATCTGGGGTCTTCCACAGCCAAATGAACCTCCAATTAATGTGAAAGATGTTTTACTGGCAGATGCCTTTCCTAGTGTAGAGTGCACTACCTTGTGAATGCCCAGTGAGGGGAAACACCCACACACTCTGCCATTTACACACACTTAAGGTGATTTTTTACTTCTATGTCAAGTGCACATGAATGGTCAGGGGGTGCCTTCCTCTAGTTGCATACCTTTCCCCATTGCCTAATGTGGACCCTGATGCACACCTCTCAAAAAATGTAACTACGAGATGTGGGCCTAGCGTAAGAACTGTGATTGGTTGTTTTGTTAGTACTGATACGAGTGAGCAGGGCTGAGAGCCATGGAAGAGGAGCGTGGCCGAAGTTGCAAGTCTTTAACAAGTATCTAGTCCTGTTGAGGAGATCCAAATGTATACTTTTGTTTCGTGATTACATTAAGATTAATGTTTGAGCTAACTGGACAGTAAGTTAGTACTGCATGCATTTCCAGTGTAAATAAAACACCTATGAAATAACTCAACACAGAAGAACATAAAATCACCTCTGTTATTGCAGAGCAACACAAACAGAACACAGAAATATAAATGCACAGCAACTTGCAAGGCATGCACCGTGGGTTACGGTGTTCACTTGAAACAGAACTATAATTCAGCCTTTATACATTAGGCAAACTATTTTATCCAATTTACCTACAGTATACCACGTCTTTGGACTGTGGAGGAAACTGGAGCACCTAGAGGAAACCTACATGGGAAGTACCATTCATATGCATGCAAATCAAAGTCTCTTTAAGGCAAGTCATTTTAATCGACGGCCATCTTTGAAAACCCTCTTGGGCAGTATGCGCGGGCATTAAGTTTGAATGGGTAAACATTGAGGTTTATTTATAAACTTATTTCGAGAGGATCACGTGCATAGGATTTACCACCGCTAGTCTCACATTAGCTAATCATGTTCTTCCAATCATATGATTTCTAAGATACTATAAATAACCACAGTCTTCAGTCCACATTTATCTTCAACTGGAAGAAACCCCCCCTTCCTCCCCATTCTCCTCCTTTACCTTAGATTGGGTGCCCCGGCGGCCCAGTGGTTAGCACTGTTAGACCGACAGCAAGAACACTGCCGGCCCTGGTACTCGCCAGGTCGGTGGATGTTTCTGTGAGGAGTTTGTATATTCTCCCCGTGTCCATGTGGGCTTCTCCCGGGTTCTCCAGTTTCCCCCACCATCCAAAGATATACACAATACATAACATATTTAGCAAATCAGACACTTGTCTAGCTCCCTTCTTTCTCAAGTGTTCCCTAAGCTACTGCGGCAGAGGAGTTTTTGAGATCCACCTGATCTCAAGCTCCCCTCTCGCTCTGCGAACCGGAGGGAGCCCTGGGCTCGAGGATCCCTTGAGCTCAGTGCTGTCTCCCAGGACAGCATGCCAAACAAGCTTTTGATAGATCATCAGCTAAGTGTGAACTTATGAAATTCTCCAAAATTGCTTGCCAAGCTTAGGATTGAATTTCATATTAGGAATCACTTATAAAATTAAACAACAACCATCTCTTGGTTTCATTTCTAAACGTTCGAATCATACAAAACCTGCAGAAACTCACGCCTGGTTCGAGCCCCTCCCCCAGAGAATTATCTGTCTATATTGATCACTGATTGGCTTCTTAATGAGTGGCTGGGCTTCATTCACCATATTGACCGTTAAACTTTTCTCCATTCAAAACTATACAAGTGACACATCTTGTGTTTTCTTTAGTCTTTGATGCAAATGCATCAGACTGGAAACGCAAACCCATACAGAAATATTTTAGATTTCGCTGCATAGCAAATAAGCAAAAAAAAAAAAAAAACTCTGACTGGAGAATTTGTGTCACAAGACCATTAGGTGATCATAACCTCACAGACCTACAGGAATTTCAAATATGGAGAAATGGGTCATTCTAGTTGTGTCACATCATCCTATTTTATCCCACTCCTTTTTGTAGCCCTAACTGAACAAATTTGGCATGCTCAAAGTCTAATGTGCAGCTTAAACCATGTGGGCTCAATGAGATCGTCCTCTAGATGTGAAACACTGAACCAATTTTATTGTTTTTAGCTGATCTTGGATCAGTTTTATGAGTTTGTTGACATTTTAATGAGACACTTGCAATATTGTAACAGTATCTTATTAGCTGAATGCATTTAGTACACTATGCGCAAAATAGAATGTTTGAAATGTGTTTGTAAAAGCTATTTTAATGTATGTTTATCTGATTTTTATGGCTTAAACTATACTGTATCATGTTTGGGTTGCACGGTTTACCGGTACTTTGTAGCACCACAATACTATGGCTCCAAAATCATGCCGCTGCCTCTGTAGTTTGTAAACGGTAGTATCATCATTGGCTGTTCTTCAATAGTATATGTTGCATGTAGATCACACATTTATGCCTAAAAATAATGAATAGACCACTTTATTTTATTTTAATTGTAACAATCTGCATTAAGACTTTGTGTAGAAGTTGTGCCTTTTATGATATTGCACATTTTCTGATGCTTCAAACACATCTGAATCAGTTCATTTTTGTTCCTGTGATTATGATTTAGCTACAACGACCACAAAAACAAAAGAAATGTTTATATCCAAAATATCTGTACAAATGATCTGATCTGATTAATGATTTTCTATACTAAGGGAATTATGAGGTAAATTTACGCATTATAACATATAAAATATAGTATTTGTAACCGTTTGCTTTATTTCATAGATTTGAGTTAATGAATTAATACAGTATCACGATACTACTTGGTATGGTGATAATTCTGCTTGTATAGTATCGTGGCCTAAATTTATAGTATCGTGACATCCCTACTTTACATGGTTTAAAAAATAAAAAACTACAGAGTTACAACAACAATCTGCATATTCCTTGGACCCGAGAGGTTCTAACAGTCTCTCTCCACATCTGTCCCTCAG
Seq C2 exon
ATATCTGAACTACTTTGCAACCAAACCGAGCCCCACAGGTGTGCTGCTGGACCTGTGGGAAGCCTGCCATCAGGGGGACGCAGACCTGGTCTCGCTGGCGACAGCTCTGGAAGAGATGGGCAAGAGTGAGGTCTTGGTTGTCATGACGACAGATGGCGATTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033327:ENSDART00000045951:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(34.2=44.3)
A:
NA
C2:
PF0053117=Death=PD(64.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]