RnoINT0160605 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30339673-30344021:-
Coord C1 exon
chr20:30343840-30344021
Coord A exon
chr20:30342517-30343839
Coord C2 exon
chr20:30339673-30342516
Length
1323 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TCTTTGTTTCCTTCCAACAGGTA
3' ss Score
12.89
Exon sequences
Seq C1 exon
ACGCCTGCTGGCTCCCTGGATGCACTCTGCTCTGCCCCTGGCAATGCTGCCACCACACAGCTGGGACCCTATGCCTTCAAGATACCACTGTCCATCCGCCAGAAGATCTGCAACAGCCTGGACGCCCCCAACTCACGGGGCAATGACTGGCGGCTGTTGGCACAGAAGCTCTCCATGGACCG
Seq A exon
GTGAGTATCCCAAGCCGCAGTCACCCCCGCTGCCCTCATCCTCAGCGTCTGGCAGAGCAGTGGGGCGCGTGTCCCAATCCAGTTTCCCTTGTGCTGAGCCTACATAGGTGGTCTGAGACTCGGCTCTGACCCTTAGAGAAGCTCGGGCAGCAGGATCAGGCCCAGAGTGAAAGTGAATGCCAGAAAGAACGGGACGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCATAACCATCTGTAATGAGATATGATGCCCTTTTCTGGTATGTCTGAAGACAGCTACAGTGTACTTATATATAATAAATAACTCTTAAAAAAATAAATAAAAATAAAAAAGATTTATAGAAAGAACGGGACGTGCTTGCCCGGAAGGTCTCTCAGGGTCCCTGTGTCTTTTGGTGATGGTGATGAAGAGGAGAGGGTGCTTTGGGTGAGCTTGGGCTTCATCAGCTGTGTGAGGAAATGTGGGAAGTTAAAAGGAACAGAGGCGGATCTTGGCACACAGCTTCAGGACTTTTGTCCCTGCACAGTTTTCACTGCCGCTGCTGTGCATTAAAGCAAAGCTGACAACTGTGGCAGGAGGCTGTCGTGAAGCAAAGTCACCTCAGATATAGATTGGAAGGGCCAGGGCAGGACACACCCCAGTGACTGGTCTCCTCCCACCATGCCCCACCTTCCACGGGTCCAGCCCTGGCCTACAACATATTTAGATGTTGCACACGCATGTACACAGCACACTCTTCATGAAGCATGTATGAAGGTCAGAAGATAACCTTTGGTCTCTTTGTTCTGCCCTGTGTGTCAGGCTAGCTAGCCCAGGAGCTTGCAAGGACACCTCTGTCTGTTTCCCATCCCCCCGAAGCGGAGTGCTCAAGGAACAGTGGGATTATAGACATGTGGTTTTCATGTTGGCTGCAGGGATTTGAACTCGAGTCTACACTTTTACCCACAGAACCATCTTGCCTGCCCTCATGCAGATTCTGAGTCCCTCCGTGGGTTTATCTGTTGATGAAGGCAGACACTCAGGATGTAGGGCTTGCTCAGAGCCCCACCTCTAAAAACCTGCTCACAGGAGATCAAGAGAGAGATGAGTCTTAGAGTGTACTGACTTACCTAGGACTACAAAGCCTACAACTGAGGAACACAGGATTCAGACTCAAGGCCAGGGGACTCTGGAGCCCACAGTCTTCCCACCACCCGAGGCTTCCCAGTTCACAGGCTGGTCACCTCAGGGGCGCCAAAATTTCTCTTTGTTTCCTTCCAACAG
Seq C2 exon
GTACCTGAACTACTTCGCCACCAAAGCTAGTCCCACAGGCGTGATCTTAGACCTCTGGGAAGCTCGGCAGCAGGATGATGGGGACCTCAACAGCCTGGCCAGTGCCTTGGAGGAGATGGGCAAGAGTGAGATGCTGGTAGCCATGACCACTGATGGCGATTGCTGAGTGCCTGTGACCTCAGGCCTGTGGGGGCCAGTAGGAGATGGTGCAAGGAGGCCTGGCAACCTCTCTGTGGGGGTGTCCAACCTCCACCATCCCTGGCTCACAGCTGGAATGGTCCCTCACGCCCCTCCCCACCACAACCCTCAGACCACCACCAGCCTTAGAAAGACTCTGTGCTCTACTGCCAGGAGGCGGGGATCCTCGGCCTCACCGTTTCCCCAGCTCACTCTGGGGTGGGCTGAGTCCTCGGGGGCAGCTGAAGGCCAGAGGCTTTCCCCCCACAACACACCACCCTCAGCCCTGTGACTTTGGAGGCCCACGGGTTTCAGTTCTGTGTTCACATGGTCCTCGGCTAAGGACTGCTCTCCTATCCCGGGTCCTCTCTGAAAGGTCAAGTTCAGTTCAAGCAAACTGCTCGCTTTCTCCTGCCCACAAACTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATGAGCCTCAGAAGTCAGCGAGACTCGGGCAATGATAGTGCAAAAACTATAAGGGCAAAGAAACCCAGTTTCTTAGGGAACGAAAATGATTTATCATCCAGATACCTGGATAGGTCCTTTTTAAGAAAACAAACAAACAAACAAAAAAGTAAGGAAAGAAAAAAAAACTTTTATCCTTGAATGTGGTTAAGAGTGGCTGTGCTTGTGGTTTGGGCCATAGGCAAGTGCATTCTCGGGCACACGTGTGCATGGGTGTGGTCAGCAAGAGACTGCACAGGGGAATACTTTGCTGTGGCAAGACCTCAGTGTCCCTAGCTGTGCAGGGAGCTGAGACAGGGTTTTAGCCATGACACCAAGTGCTAAACTCTTGAGCAGAGGCTGGCCTGGTGGTCCTCCCACTCTCTGTGCTCTTCTGTGGCCTCCTCTAGTTTTGGGGAACCCAAATGGAGGCCCAGGCCAGCTGTGATGGGGGAGACTGTTCAGGTCTGTTTTACTTTGGTGATTCCTGGTCTAGTGATGGCCAAGGGTGTGGCTCTTACTGAGAGGGAGGGGCTATTCCAGGGATGGTTCCCTCCCAGGTTGGATGGCTTTGTGTCTAGGCTGGTACTAGCCAGTCCGCACCCTGTTTACCCACTCATCTTCCTTCTTGGAGTCAGGAGCTGTGAAGGTAACTTTTCCACCCACCTTTGGCCACAGCCCATTCTGGGATGTTCCACAGGGCCACAGTAGAAGGGATGAATTCTTGTCCCTTCAGCCCACGGGCAGTGATGGAGACCAGGACCTCACTGTAGACATAGAGATCCTATCGAAGGATACTTACTGTAGAATCAAGACTTGCTGTAAAACTTCCCTGAACTCCCATTGAGACCACCCTGGCAGGTCCTGAGCTTTGAAAGTTGGGGCCTCTGTGGGGAGGCAGGTTTCATGGCCACAGACCCAGCGAGCGTCTGTGCCCTGGGTTTCCGCAGTGGCTCCTGAAGTGGGACTCTAAGACTGAGACCGAGGTGCTCCTGGCATCTAGGTGAATGGTGCCTCATAGAGTGTCCTCAGCTCCTCCTGCCAAAGATGCTCATCCCCGTGGGCATACTCTTGCTGGTCACTGTTAGCCCGCACATAGAAATGGGAAGCCCGGGAACCAAGTTGTAGCTATGCTGTGTGACTTCAGGCACATAACCGCTTTCTCTGGGCTTAAGTGTCCTTTTATCCTGGGATGCTCCACGAGGCCCCTTAGGTTCCCACACTCCTCTGGGACTCTAGTAGAGACAAGTTGATTGTGGTCTGCATTTGCCCATCCTCAGAAACCTGCCTGTCTGGGCCCTGGTGGGAGCACGTAGGGAGCGAGTCCCAGTTTACGGTCTGACTCTTGGGAGGTGCTCAGCATCTGGAGCACAAAGGCTGGAGCTGGAGCCTGGGGCAGGGCTCCAACCTCATAGTTTGGTAGCAGCCGCCCGGGGAATGTCGGCCAACTCTGGGCAGAGCCAGGCAGGGCTATTGGGTTGGGTTTCCACTCCTGCCTCCAATGAGATGGCACCTCCCCTTCCCATTCCTGGCCAGCTTGGTGTTGCCGGGTCCTGCAGGGTATTTCTGTGTCATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCACGCGCGCGCGTGCGTGCTTGCCTGTGTTTTTCAACTTGGGCACATCAGGGCACCCCTCCTAGAACGCACACACTTGTCCCCACACGTGGACATGACCTCTGTGCCCAGGCTCGTGCCACTGAGGAGGACATGCCTGTTTGCTGTCCCAAGTCAGTCAGTCCGTGTATCTCCTAATGTGCCTCTCCTGCCCTTCCTCAGGGGGCTCCAGGCTTCTGCGCTCTGGCTAGACACCTCCTGAGGGACAGAGACCCTCCTCATCCCTGGATCTGCCAGGGCTCTCTGGTCCCCATCTTGAGGCTCCCAGGCATCTGAGTCAGCACCTTCCTCCCGCCCTCAGAGGTCGGGTGTGTGGGAGCTTGGATGTCAGGCTGTGAACATGGCTGTGTGTCTGTGGGTTCTGATCCACTGGGGATAGTCCCAGCCCCACCCGTTCATTCTGTAAACAACTTGTAAATAACCTTTAGCATTCCTCTTGTAACAAAATTAATTTTTATGAAATAAATTATATTTCCTAGTCTATAAAAAAAAATCCAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(34.2=44.3)
A:
NA
C2:
PF0053117=Death=PD(64.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAAGCTCTCCATGGAC
R:
TTCTAAGGCTGGTGGTGGTCT
Band lengths:
352-1675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]