BtaINT0157560 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27598389-27599754:+
Coord C1 exon
chr28:27598389-27598570
Coord A exon
chr28:27598571-27599066
Coord C2 exon
chr28:27599067-27599754
Length
496 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTTCTCCTTCCCTCCGTCAGGTA
3' ss Score
10.35
Exon sequences
Seq C1 exon
ACGCCTGCTGGCTCCCTAGACGCCCTCTGCTCTGCCCCCAGCAGTGTGGTCACCACCCAACTGGGACCCTACGCCTTCAAGATACCCCTGTCCATCCGCCAGAAGATATGCAACAGCCTAGATGCCCCCAACTCACGTGGCAATGACTGGCGGCTATTGGCACAGAAGCTGTCCATGGACCG
Seq A exon
GTGAGTGTGGGGATGGTCTACCAGGCTGGGACCACAGCCGCCCCCCTCCCGGTGTCCCCACGGGGCAGGCAGCCTGATAGTAGTTCCTTGAAGAGCATCATGCTCAGATGCCAGCCCGTGAGAACAGGTGGAGCCAGGATACCAGCCAGGTGTGATCAGCAGCAGCAGCCTTGTGCCCAGGACATCAGGTGTTCTGGAAATGCTTGCTGGGTGACAGAATCCATCCTGGTGTCAGAACTCTTCTGGAGAGCTTAAAATGCTGGATAAATATAATGGCAATAATCATCCTCACTGGGGCTCAAAGAGGAGCAGTGTATGGCCTGGGGCCATACAGCCTGCAAGCAGAGGGGCTGGGACTCAGACCCAGGATTGTCGGGGTCCAGAGCCCACAGTCCCGGTGCTCTGGGGAGGTCCTCCCAGGAGCCCCTCAACCCACCGGCCCTGGGAGGGGCTGAGCGTCTGGGGAGCCCAGGGTTCTTCTCCTTCCCTCCGTCAG
Seq C2 exon
GTACCTGAACTACTTTGCCACCAAAGCAAGCCCCACGGGTGTGATCCTGGACCTTTGGGAAGCTCTGCAGCAGGACGACGGGGACCTCAACAGCCTGGCGAGTGCCTTGGAGGAGATGGGCAAGAGCGAGATGCTGGTGGCCATGGCCACCGACGGGGAGTGCTGAGCTGACCTGCACCTGCGGGCTGGGAGGGACCAGCAGGAGGCGGGCACAGGCAGGCCCGGGGAAGCCTCCTGGGGGGCCATTGGGCCTCCTCTGCCCCCGAGCTCACAGCCAGAGTCGCCTCTCCTCCTCCTCCCCCGCTCCTTGCCCCACCTGCAGACCACAACCAGCCTTAGGAGATCCATGGACTTCGTTGTTGGGAGGACTCAGCGGTCCTTCTCCACCCCATGCTGTCTCTCCTGACCTCAGACCTCTGTGCAGGAAGCGGGAGGGGCCAGGCCCTCTGGAGGCAGCTAGGGGAGCAAGGAGGTGGCCCTCCCAGCCTCAGCCCCGGGAAGTCTCGGGGCATCTGTTTTAGTTGTGTTCTTTATTCTCTTCCTCAGTCATTGATTCTCCCTCCTCCATCTCCATTCACACCGTTTTCCTCTTTGAAGAGTCAAGTACAATTCAGAGAAACTGCTTTCTCCTGTCCATACGTGAAAAGGAAAAGGAAAGAAAGAAAGCTTCCAACCACTAGTAAGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(34.2=44.3)
A:
NA
C2:
PF0053117=Death=PD(64.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAAGCTGTCCATGGACC
R:
CTGGTTGTGGTCTGCAGGTG
Band lengths:
355-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]