MmuINT0170589 @ mm10
Intron Retention
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 netrin receptor B [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60762593-60767161:-
Coord C1 exon
chr10:60766980-60767161
Coord A exon
chr10:60765374-60766979
Coord C2 exon
chr10:60762593-60765373
Length
1606 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTTCTGTTTCCTTCCAACAGGTA
3' ss Score
13.46
Exon sequences
Seq C1 exon
ACGCCTGCTGGCTCCCTGGATGCTCTCTGCTCTGCCCCGGGCAATGCCATCACCACCCAGCTGGGACCCTATGCCTTCAAGATACCCCTGTCCATCCGCCAAAAGATCTGCAGCAGCCTGGACGCCCCCAACTCCCGGGGCAACGACTGGAGGCTGTTGGCGCAGAAGCTGTCCATGGACCG
Seq A exon
GTGAGTATCCCAAGCTGCAGTCATCCCCATTGCCCTCACCCTCAGGGTCTGGCACAGCAGTGGGGTGCACATCCCAGCTGACAAAGGCCAGCTCCCAGCTCAGCTTCCCTTGTGCCGTCAGTCCCCAGAGCCCGTGCGAAAATGTCGTGCATGCTGACACACACTGATAATCCCAGCACTGGGGAGACAGAGGAAGCTCCCTGGAGCTTGCTAGCCAGCCACTCTAGCTGAATGATGAGAAACCCTGTCTCAAGTGAGGTGGATGGTATCGCTAAGGATGACTCGTGAGATTGTCCTCTGACACACGCACGCACGCGCACACACACACACACACACACACACATTCACATGCATGTGCTAAAAATTAATTTTTAAAAAGACATTTAGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGTTCTAAGGAAGGTCCTGAGTTCAAATCCCATCAACCACATGGTGGCTCACGACCATCCATAATGGGATCCGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATCTTAAAAAAAAAGAAAAGAAAAGAAAAGCCATCTAGTTACTATAAATGGGAGAAGCTTACAAAGATAGCTAGAGACTCTGCTCCAATCCTCAGAAGCGTGCTTGGAAGGTCTCTCAGGGTCCCGGCGTCTTTTGGTGGTGGTGATGGCGATGGAGAAGAGAAGAGGGTGCTTTGGGTGAGCTCGGGCTTTGTCAGCTGTGTGAGGAGATGTGGGAATCAACCCCTCCTCACTGCGGAATCATATCCGGCAGTTTAAAGGAACCAAGGTGGATCTTGAGCCACAGCTTCAGGGGCGTCTGTCCCTGCAGTTTCCGCTTGCTGCTGCTGCTGCTGTCTATTAAAGCATTGTGTCAGGAGGCTATGGTGGAGTAAAGTCACCTCAGACGTAGACTGGAAGGGCCAGGGCAAGACACACCCCAGTGACCAGCCCCGCCGTCCACAGGTCCAGCCCTGGCCAACAGTGTATTCAGATGTTGTACACACATGTATTTAGCATGTGTGTGTATGCAGCACGCTGTGCATGGAGCATGTGTGGAGGTCAGAGGATAACCTCCGATCTCTTTGTTCTTCTGCTTGCCCTGAGTGTCAGGTAAGCTAGCCCAGGAGCTTACAGGGACTTCCCCTGTCTGTGCTTCCCAGCTCCCTGAAATGGCGTGCTCAAGGAACAGTGGATTTATAGACGTATGGTTTTCATGTTGGCTGCAGGGATTTGAACTCAAGTCTACACTACCCACAGAACCATCTTGCCAGCCCTCATACAGACTCTGAGTTCCTCCATGGGTTTATCTGTTGATGAAGGCAGAGGTTCAAGTTGCAGGAGCTTGCTCAGCCCCACCTCTAAACCACGCTAGTAGGAGATCAAGAGGACCAAGGGATGAGTCTTAGCATACATGGACTTGCCTAGGGCTGCAAAGTCTACAACTGGGGAACCCAGGAATCAAGACTCAAGGCTGCGGGACTCTGGAGCCCACAGTCTTCCCATCACCCGGGTCTTCCCAATTCATGGGCTGGTCACCTCAGGGGTGCCAACATTTCTGTTTCCTTCCAACAG
Seq C2 exon
GTACCTAAACTACTTCGCCACCAAAGCTAGTCCCACAGGTGTCATCTTAGACCTCTGGGAAGCTCGGCAACAGGATGACGGGGACCTCAACAGCCTGGCCAGTGCCTTGGAGGAGATGGGCAAGAGTGAGATGCTGGTAGCCATGGCCACAGATGGCGATTGCTGAGTGCCTGTGACCACAGGCCTGTGGGGATCAGTAGGAGACGGTGCAAGGAGGCCTGGCAGCCTCTGCACAGGGGTGCCCAGCCTCCACCACTCCTGGCTCACAGCAGGAATGGTCCTTCAACTCCCTCCCCGCCACAACCCTCAGACCACCACCACCAGCCTTAGAAAGTCTCTGTGCTCTACTGCCAAGAGGCCGGGATCCTCTGGCCCACTGTTTCCCCAGCTCACTCTGGGGTGGGCTGAGGCCTCTGGGACAGCTGAAAGCCAGAGGCTTTCCCCTGCGACAACACACCACCCTCAGCCCTGTGACTTTGGGGACCCACAGGTTTCAATTCTGTGTTCACATGGTCCTGGGCTAGGGACCGCTCTCTTATCCCGGGTCGAGTTCAGTTCAGGCAAACTGCTTTTTCCTGTCCACAAGCAGAGAGGGAAGATTAGGGGAGTGGGGGTGGGGGGTGGGGGATGAGCCTCAGAAGTCAGCGAGACTCAGGTAGTGAGAGAGCAAAAACAGTAAGGGCAAAGAAAGACCCAGTTTCTTAGGGAACGCAAATGATTTATTATCCAGATACTTGGATAGTTCCTTTTTAAGAAAACAAAACAAACAAAAAAAAGTAAGAAAAGGAAAAAAAAAACCTTTTATCCTTGAATGTGGCTAAGAGTGGCTATGCTTGTGATTTGGGCCATAGGCGAGTGCACTTGTGGACACATGTGTGTGTGGGTGTGGTCAATAAGAGACTGCACAGGGAAAGGCTTTGCTATGTCAAGGCCTCAGTTTCCCCAGCTGTGCAGGGAGCTGAGACAGGGTTTTAGCCATGGCCCTGAGTTCTAAAGTCACAAGCAGAAGCTGGGGCCTGGTGGCCTTCGTCCTCTCCGGAGCCCCCTGCAGGTGCCCTTCTGTGGCCTCCTCTGGCTTTGGAGGGTCCAGCTGTGGTTCTGGGAGACTGTTCAGGTCTGTTTGGTGATTCCTGGTCTCGTGATGGCCAAAACTCTTACTGAGAGGGAGGGGGTGTTCCAGGGAGGGCTCTCTCCCTGGGTGAGGCTGGGTGGCTCTGTGTCTAAGCTGGCACTAGCCGGTCTGCACCCCTGTGCCTCTAGCCATCATTTTACCCGCTGATCTCCCTACTGGGGTCAGGAGATATGAAGGTAACTAAGTAGACAGCTGTATACCCACTCTTGACCACAGCGCATTCTGGGATGTTCCATGGGGCCAGTGGAAGGGATGAATTCTTGTCCCTTTCAGCCCACGGGCAGTGACAGGGACTAGGATCACTGGTATTGATCCTATTGAGATGCTGACTTCCCTGAACTGCCCTTGACCAGCCTGAAAGCTTTGAAAGTTGGGGCCTCTGTGAGGAGGCAGGTTTCATGGCCACAGACCCAGCAAGCATCTCTGCCCTGGTTTTCCTGAAGTGGGGCTCTGAGACAGACCAAGGTGCCCCTGGCATCTAGGTGAACAGTGCCTCATAGAGTAGTCCTCAGCTCCTCCTGCCAAAGATGCTCATCCCTGTGGGCATACTCTCACTGGTCACTGTTAGCCCGCACATAGAAGGGGGAAGCCAAGGTGGAGCTGTGCTGTGTGACTTCAGGCACATAACTGCTTTCTCTGGGCTTAAGTGTCCTTTTATCCTGGGATGCTCCACGAGGCCCCTTGGGTTCCCACGCTTCTCTGAGAATCGAGTAGAGACAAGTTGATTGTGGTCTGCATGCTCTCTCCTTTGCCCGTCCTCGGAAACCTGCCTGTCTGGGACCTGAGGGAGCACTTAGTGAGCAAGTCCCAGCTTACAGTCCGACTCTTACTTAGAAGGTGCTCAGCATCTGGGGCACAGAAGCTAGAGCTGGAGCCTGGGGTAGGGCTCTAACCAGACAGCCCAGGTAAGGTCAAGCCAACTCTGAGCTGAGCCAGACAGGGCTGTTGGGTTGGGTTTCCATTCCTGCCTCCAATGAGATGAAGCCTCTCCCCTTCCCATTCCTAGCCAGCTTGGCGTTGCTGGGTCCTGCAGGGTATTTCTGTGTCATCTTGGGTAGTATGTGTGTTTGGGAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCCTGTGCTTTTCAACTTGGCACATCAGGGCACCCCTCCCAGAACACGCACACCTATCCCCACATGTGGACATGACCTCTGTGCCCAGGTTTGTGCCACTGGAGGTGGGCGTGCCTGTTTGCTGTCCCCGAGTCACAGTCAGTTGGTGTATCTCCTATGTGCCTCTCTGCTCTTCTCAATGGGGCCAGGTGTCTGAGTTCTGGCCATACCCCTTGAGGGACAGGGACCCTTCTTATCCCTGGATCTTTCAGGGCTCTCTGGTCCCCCATCTTGAGGCTCCCAGGCATCCGAGACAGCACCTTCCTCCCACCCTCAGAGGTCAAGTGGGTGGGAGCTCAGGTGCCGGGGTGTGGACATGGCTGTGTGTCTGTGGGTTCTGATATGCAGGGGACGGTCCCGGCCCTGTTCGTCCATTCTGTAAATAACTTGTAAATAGTCTTTAGCATTCCTCTTGTAACAAGATTAATTTTTATGAAATAAATTATATTTCCTAGTCTAATTAAAAAAAAAAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099:ENSMUST00000077925:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(34.2=44.3)
A:
NA
C2:
PF0053117=Death=PD(64.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGATCTGCAGCAGCCTGG
R:
ATTCCTGCTGTGAGCCAGGA
Band lengths:
358-1964
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types